XLOC_016015 (cirbpa)


Basic Information

Item Value
gene id XLOC_016015
gene name cirbpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58841181 ~ 58848884 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031686
GTCTCTGGAGTGCTGATCGCGTTGGAGACGCACATTCATCGTTTCTCCCAGAACTGCGACATCACAGATCCATCATGTCTGACGAAGGGAAGCTGTTCATCGGCGGGCTGAGCTTCGACACCACCGAGCAGTCGCTAGAGGACGCCTTCTCCAAATATGGTGTGATCACCAACGTTCATGTTGCCCGAAACCGAGAAACCAACAGATCCAGAGGATTCGGTTTCGTGACCTTTGAGAATCCAGATGATGCGAAGGATGCACTGGAGGGGATGAACGGAAAGTCTGTGGATGGCCGGACGATCCGTGTGGATGAGGCAGGTAAAGGTGGAGGTGGCGGCGGTGGCCGATCAGGTGGAGGAGGATCATACAGAGGTGgcggaggaggaagaggaggtggaggaggattCTTCAGAGGAGGCAGAGGACGAGGAGGTGGAGGTGGAGGATATGGAGGAGGAGATCGCAGTTATGGAGACAGAAGCTACGGTGGTGGTGGAGGAGGATACAAGAGTGGAGGAGGTGGATATTCCTCTGGAGGAGGCGGAGGGTACAACagagacagAGGTTCTGGTTACGGTGATCGAAGCAGCTCGTACAAAGATGGCTATGATAGCTATGCTGTACAAGATTAAAACCCAAGACCTGACGCGTCACTGGCCGAGCGTTTCTAAAGACTCATGGATCTGTTCTTGGATTTGTTGTTTCTGTTCTGTTCTTGTACTTTTGAGGGGGAAAAAggctgttttgtatttttatttctctcggccgtgaatgaatgaatgttcctcTTCTGCACCACGAGCCTCATTTTCTGAATCCTTTAGCGTTGCGTTTGTTGGGGTCACCGTCCGCGGTGCGACTGCTTTTATGGGGATCAAAGAGTGTTACTGTACCTGCGCTGTCATTTATAAGAGAACGGCTCCTTCTGTtagctgtgtttaaaaaaaaaaaaaagcaacaaatttgTCCATGTTCAATATCCAAAAAGTGAATTCCTTTCAGACTGGTGAGCGCTGGAGCGTCCGGCATCAGTGCGGCTGTTCTTGCGGAGGTATATCGATATCTCTGTCTCTGCTCCATGCCTGTTTTAATGATGGACTAAACCTATTCTCACACGCGTTATATATCGATCATTTACTTGAAAGAGAAGCAGAAATTGTGAACCGTAAACTCCAGAACTGAGATATCCTTGTGCTCTTGTTTTTCTTTGTATTGAAATTTGacactttgtttttattctcatttttatttttgcttttttccaATTGTGGCTTCATGGAGCCTATTAAACGAAAACGTTTGTTC

Function

symbol description
cirbpa Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).

GO:

id name namespace
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-329 Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000103672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031686 True 1305 mRNA 0.47 7 58841181 58848884

Neighbor

gene id symbol gene type direction distance location
XLOC_016014 CABZ01083448.1 coding upstream 98318 58739111 ~ 58742863 (+)
XLOC_016013 vapal coding upstream 409831 58377395 ~ 58431350 (+)
XLOC_016012 KCNJ10 coding upstream 598316 58221163 ~ 58242865 (+)
XLOC_016011 NA coding upstream 666618 58143369 ~ 58174563 (+)
XLOC_016010 NA coding upstream 752880 58087770 ~ 58088301 (+)
XLOC_016016 NA coding downstream 5612 58854496 ~ 58855890 (+)
XLOC_016017 NA coding downstream 16876 58865760 ~ 58868244 (+)
XLOC_016018 CABZ01085658.1 coding downstream 28278 58877162 ~ 58882502 (+)
XLOC_016019 CABZ01100278.1 coding downstream 146420 58995304 ~ 59013775 (+)
XLOC_016020 si:ch1073-391i24.1 coding downstream 166994 59015878 ~ 59032808 (+)
XLOC_016009 NA non-coding upstream 816881 58023674 ~ 58024300 (+)
XLOC_016007 NA non-coding upstream 842598 57998296 ~ 57998583 (+)
XLOC_016006 NA non-coding upstream 918465 57919451 ~ 57922716 (+)
XLOC_016022 NA non-coding downstream 287339 59136223 ~ 59396565 (+)
XLOC_016023 NA non-coding downstream 295064 59143948 ~ 59345612 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000078_00064946_00068618 NA coding CI01000078 null 64753 ~ 69029 (-)