XLOC_016285 (pimr52)


Basic Information

Item Value
gene id XLOC_016285
gene name pimr52
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19518520 ~ 19520690 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032110
ATGGCGCAAATGGCTGAAAGAGAAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCTCTTTTGGCCGATTCAGTGTCCACAGatcagaggaagaggaagaggaagcaGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCGCTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGagaacctgctgatctccacagaCTCACacgacatcaagctgctggacttcggctgtggagatctaATGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCTATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCCTTCAGAGGCGCACGGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGAAAGCTGTCGACAGagtgccgtcagctgattcgctggtgtctcagtgcagcgCCAGCAGATCGGCCCAGTTTAGATGACATTGAGCGCCACCCCTGGTTGCAGTGA
>TCONS_00032111
TATGACTCGATATATAAACACTGAAAGCGCTGAAAATCttggttgagagacgaggcgaATTCAGAGACTTGCAGAGACTTTTGTGCTGAAACTGATTCTTCAAGAAGCCCTGAGGATTTCTGAGAGGAGACTTTCTTTCCAGGACGACATCGGAGGATTTTTTCTTTGAAaagaatatataattattttaatcgtTCAGATTACTTGTTAAGACGCTTATTTTATtgctcttttgtcatttctgTTTTAGTTTGTGCCTTTTTTTCTACTTGTTTGTTTGACATTTCAGTTGTCTTTTATTGATTTGTCATTATATTTTCTCTTGTTTTATTTTCTCTTGTGGTGGAGTTTTGCAGGACGGTCTTCATGGCGCAAATGGCTGAAAGAGAAAGCCGCTCCAGATCCAGGAGTGCAGCTTTCACCCAGACAGCAGTTCAGGACACAGAGACACGGGACGCTTCTGGTGGGCTTCCTGGTTATTTGGCTCCTCTGTCCTCTCTTTTGGCCGATTCAGTGTCCACAGatcagaggaagaggaagaggaagcaGCAAACGGCGTCCACCTCGTCTAGGAGACCtgccaaacgctctcgcagagACCAATATGCCaagggcccgttgctgggacgaggcggattcggctctgtgtttgctgggatccgcaggtctgatggactgccaGTGGCCATCAAGTACGTGTCTAAAGAGCCGACGGACACCAGACTGAAAGTTGACGGTCAGGGTCGTCTGCCGCTGGAGGTGGCGTTGATGACCCGCGTCTCTTCAGCTCCTGTctgccccagtgtcctgcagctgctggactggtttgaccaTCGCAGACGCTACGTCCTGATCCTGGAGCGTCCGGCTccttgccaagatctccagagtttctgtgaggagaacggctgtctggacGAGCCtctggccaagaaagtgctggtgcagctgatcgcggcgctgaaacactgcgagagccgccGCGTCCTGCACCGAGACGTCAAGCCAGagaacctgctgatctccacagaCTCACacgacatcaagctgctggacttcggctgtggagatctaATGAAGGACTCGGCCTACAGATACTTTGCAGGCACTCCAGCTTTTGCTCCTCCTGAGTGGTTTCGGCATCATCGCTATCATGCCTCTCCACTGACAGTCTGGTCTATCGGCGTGACTCTCTACAACATCCTGTGCGACTGTTTCCCCTTCAGAGGCGCACGGAGGGTCACGTCCAAAAGCAGACTGCACTTCCCGAGAAAGCTGTCGACAGGTAAGAGATGAAGATG

Function

symbol description
pimr52 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-460 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000057265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032110 False 1011 mRNA 0.57 7 19518520 19520324
TCONS_00032111 True 1301 mRNA 0.51 6 19518676 19520690

Neighbor

gene id symbol gene type direction distance location
XLOC_016284 BX664750.1 coding downstream 5224 19506311 ~ 19513296 (-)
XLOC_016283 NA coding downstream 136198 19379111 ~ 19382322 (-)
XLOC_016282 BX511079.2 coding downstream 155359 19362798 ~ 19363161 (-)
XLOC_016281 zfyve9a coding downstream 163898 19280829 ~ 19354622 (-)
XLOC_016280 BX511079.1 coding downstream 249223 19252270 ~ 19269297 (-)
XLOC_016286 BX664750.5 coding upstream 2896 19523586 ~ 19523683 (-)
XLOC_016287 BX664750.2 coding upstream 18990 19539680 ~ 19559171 (-)
XLOC_016288 BX664750.3 coding upstream 39402 19560092 ~ 19565273 (-)
XLOC_016289 pimr51 coding upstream 53806 19574496 ~ 19630297 (-)
XLOC_016290 BX664750.7 coding upstream 58892 19579582 ~ 19579679 (-)
XLOC_016278 NA non-coding downstream 336951 19152372 ~ 19181569 (-)
XLOC_016291 NA non-coding upstream 71764 19592454 ~ 19595061 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G169989 LOC107600734,LOC107683095,LOC107716905 unknown NC_056723.1 CM032092.1 16473722 ~ 16474665 (-)