XLOC_016613 (tradv28.0)


Basic Information

Item Value
gene id XLOC_016613
gene name tradv28.0
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36318102 ~ 36318577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032639
ATGTTGACCTTCGCTGTAGTCCTGTTAACAGAATTTCTCTTAATAGCATTTCATGCTGAAGAAATCATATTCCCTAACAATAAAACAGTAATTGCCAAAGCAGATGAAAAAGTTCTCCTATCCTGCAGCTACACTGGCACGGTTTATGATTTATATTGGTACCGTCAATCCCCTGGATCAGCACCTCAGTTCCTCATAATGGAATCGTCTGGAGTTATAATACATGCTACTCCTCAGGTTCCAGGGataaaaattatcaataaaaaaaacaccaagcaTGTGGAGCTGGAGATCTTCAGTGCATCAGTGGAACATTCAGCTGTGTATTATTGCGCTGCGCGGCCCACAGTGAAAGGAAACACTCTGACACTATAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-62 No description available

Ensembl:

ensembl_id ENSDARG00000102052

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032639 True 375 TR_V_gene 0.41 2 36318102 36318577

Neighbor

gene id symbol gene type direction distance location
XLOC_016612 tradv27.0 coding downstream 1087 36316513 ~ 36317015 (-)
XLOC_016611 tradv25.0.4 coding downstream 4958 36312612 ~ 36313144 (-)
XLOC_016610 tradv23.0.2 coding downstream 8865 36308826 ~ 36309237 (-)
XLOC_016609 tradv24.0.5 coding downstream 11446 36306186 ~ 36306656 (-)
XLOC_016608 tradv25.0.3 coding downstream 13038 36304603 ~ 36305064 (-)
XLOC_016614 tradv29.0 coding upstream 2183 36320760 ~ 36321221 (-)
XLOC_016615 tradv30.0.1 coding upstream 5919 36324496 ~ 36324996 (-)
XLOC_016616 tradv31.0 coding upstream 9030 36327607 ~ 36328111 (-)
XLOC_016617 tradv23.1.4 coding upstream 13441 36332018 ~ 36332331 (-)
XLOC_016618 CU571384.1 coding upstream 28353 36346930 ~ 36350082 (-)
XLOC_016555 NA non-coding downstream 239464 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 584350 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 696235 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2210117 34106830 ~ 34107985 (-)
XLOC_016543 NA non-coding downstream 2391323 33843402 ~ 33926779 (-)
XLOC_016619 NA non-coding upstream 60662 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 428601 36747178 ~ 36826293 (-)
XLOC_016635 NA non-coding upstream 568166 36886743 ~ 36905394 (-)
XLOC_016638 NA non-coding upstream 614122 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 818091 37136668 ~ 37140483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000101_00008991_00010872 NA coding CI01000101 null 8912 ~ 11024 (+)