RNA id: TCONS_00032639


Basic Information

Item Value
RNA id TCONS_00032639
length 375
RNA type TR_V_gene
GC content 0.41
exon number 2
gene id XLOC_016613
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36318102 ~ 36318577 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGACCTTCGCTGTAGTCCTGTTAACAGAATTTCTCTTAATAGCATTTCATGCTGAAGAAATCATATTCCCTAACAATAAAACAGTAATTGCCAAAGCAGATGAAAAAGTTCTCCTATCCTGCAGCTACACTGGCACGGTTTATGATTTATATTGGTACCGTCAATCCCCTGGATCAGCACCTCAGTTCCTCATAATGGAATCGTCTGGAGTTATAATACATGCTACTCCTCAGGTTCCAGGGataaaaattatcaataaaaaaaacaccaagcaTGTGGAGCTGGAGATCTTCAGTGCATCAGTGGAACATTCAGCTGTGTATTATTGCGCTGCGCGGCCCACAGTGAAAGGAAACACTCTGACACTATAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-62 No description available

Ensembl:

ensembl_id ENSDART00000170523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033881 lncRNA downstream 239464 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 584350 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 584875 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 696235 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033381 lncRNA downstream 702015 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00033382 lncRNA upstream 60662 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033882 lncRNA upstream 346193 36664770 ~ 36673919 (-) False XLOC_016631
TCONS_00032659 lncRNA upstream 352675 36671252 ~ 36673918 (-) False XLOC_016631
TCONS_00032660 lncRNA upstream 352728 36671305 ~ 36673918 (-) True XLOC_016631
TCONS_00033883 lncRNA upstream 428601 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00032581 mRNA downstream 277282 36026183 ~ 36040820 (-) True XLOC_016554
TCONS_00032577 mRNA downstream 750992 35510048 ~ 35567110 (-) False XLOC_016551
TCONS_00032576 mRNA downstream 751127 35509418 ~ 35566975 (-) False XLOC_016551
TCONS_00032575 mRNA downstream 751164 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032574 mRNA downstream 1215033 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032644 mRNA upstream 28353 36346930 ~ 36350082 (-) True XLOC_016618
TCONS_00032645 mRNA upstream 171528 36490105 ~ 36490570 (-) True XLOC_016620
TCONS_00032646 mRNA upstream 175272 36493849 ~ 36494308 (-) True XLOC_016621
TCONS_00032647 mRNA upstream 178059 36496636 ~ 36497113 (-) True XLOC_016622
TCONS_00032648 mRNA upstream 181309 36499886 ~ 36500347 (-) True XLOC_016623
TCONS_00032638 other downstream 1087 36316513 ~ 36317015 (-) True XLOC_016612
TCONS_00032637 other downstream 4958 36312612 ~ 36313144 (-) True XLOC_016611
TCONS_00032636 other downstream 8865 36308826 ~ 36309237 (-) True XLOC_016610
TCONS_00032635 other downstream 11446 36306186 ~ 36306656 (-) True XLOC_016609
TCONS_00032634 other downstream 13038 36304603 ~ 36305064 (-) True XLOC_016608
TCONS_00032640 other upstream 2183 36320760 ~ 36321221 (-) True XLOC_016614
TCONS_00032641 other upstream 5919 36324496 ~ 36324996 (-) True XLOC_016615
TCONS_00032642 other upstream 9030 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032643 other upstream 13441 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032657 other upstream 346193 36664770 ~ 36671158 (-) False XLOC_016631

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000101_00008991_00010872.mRNA True 1026 mRNA 0.42 3 CI01000101 8912 ~ 11024 (+)