RNA id: TCONS_00032634


Basic Information

Item Value
RNA id TCONS_00032634
length 381
RNA type TR_V_gene
GC content 0.41
exon number 2
gene id XLOC_016608
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36304603 ~ 36305064 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgctaCTTGTTTTGACTTTGTTCAGCTGTTTTGTGTGTGTCAGTTTTGGGAATGTCATCACATCGGTTGAAACCCGTCTGATTCATACAGAAGGAGACGTTATAAGTGTCTCCTGCAGCTACTCCTCAGCAAGAACTTTATTCTGGTATTTCCAAAATCCTGGATCGGTTCCTCAATTTCTTTTCATCATTCTCCATTCCAATGGAGAAGTTTTACAAAAATCTGAAGCTGTGAAAGATCCTCGATTCTCTGCAAAAGTGAATGAAAAGAAAACCCATGTGTTTCTGGAGATCTCCTCTGCTAAAGTCACAGATTCAGCAATTTACTACTGTGCCTTGGAGCCCACAGTGACAGGAAAACAAACAGCACTGTACAGAAAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-30 No description available

Ensembl:

ensembl_id ENSDART00000161399

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033881 lncRNA downstream 225965 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 570851 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 571376 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 682736 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033381 lncRNA downstream 688516 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00033382 lncRNA upstream 74175 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033882 lncRNA upstream 359706 36664770 ~ 36673919 (-) False XLOC_016631
TCONS_00032659 lncRNA upstream 366188 36671252 ~ 36673918 (-) False XLOC_016631
TCONS_00032660 lncRNA upstream 366241 36671305 ~ 36673918 (-) True XLOC_016631
TCONS_00033883 lncRNA upstream 442114 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00032581 mRNA downstream 263783 36026183 ~ 36040820 (-) True XLOC_016554
TCONS_00032577 mRNA downstream 737493 35510048 ~ 35567110 (-) False XLOC_016551
TCONS_00032576 mRNA downstream 737628 35509418 ~ 35566975 (-) False XLOC_016551
TCONS_00032575 mRNA downstream 737665 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032574 mRNA downstream 1201534 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032644 mRNA upstream 41866 36346930 ~ 36350082 (-) True XLOC_016618
TCONS_00032645 mRNA upstream 185041 36490105 ~ 36490570 (-) True XLOC_016620
TCONS_00032646 mRNA upstream 188785 36493849 ~ 36494308 (-) True XLOC_016621
TCONS_00032647 mRNA upstream 191572 36496636 ~ 36497113 (-) True XLOC_016622
TCONS_00032648 mRNA upstream 194822 36499886 ~ 36500347 (-) True XLOC_016623
TCONS_00032633 other downstream 761 36303393 ~ 36303842 (-) True XLOC_016607
TCONS_00032632 other downstream 1871 36302279 ~ 36302732 (-) True XLOC_016606
TCONS_00032631 other downstream 6819 36297301 ~ 36297784 (-) True XLOC_016605
TCONS_00032630 other downstream 10265 36293820 ~ 36294338 (-) True XLOC_016604
TCONS_00032629 other downstream 11176 36292896 ~ 36293427 (-) True XLOC_016603
TCONS_00032635 other upstream 1122 36306186 ~ 36306656 (-) True XLOC_016609
TCONS_00032636 other upstream 3762 36308826 ~ 36309237 (-) True XLOC_016610
TCONS_00032637 other upstream 7548 36312612 ~ 36313144 (-) True XLOC_016611
TCONS_00032638 other upstream 11449 36316513 ~ 36317015 (-) True XLOC_016612
TCONS_00032639 other upstream 13038 36318102 ~ 36318577 (-) True XLOC_016613

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_14630753_14632419.mRNA True 1584 mRNA 0.36 3 CI01000004 14629909 ~ 14632568 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_221 True 85 tRNA 0.58 1 NC_053116.1 905500 ~ 905584 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_221 True 465 V_gene_segment 0.58 2 NC_056700.1 16862928 ~ 16863490 (-)