XLOC_016631 (ccnl1b)


Basic Information

Item Value
gene id XLOC_016631
gene name ccnl1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36664173 ~ 36674005 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032656
CGGGATTTCACTGTTCCAACGCAACGAGTGACGTCACAAACGTTGACGTCACTTCCGCCGTTGAAGTGCGTCAATCGCGAAACGTTGCCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGgaACTATATGAATGATGCCCTCAGAACCAGTGCATTTGTGAGGTTTGAACCTGAGACCATTGCGTGTGCCTGCATTTACCTCGCTGCTCGAGTACTACAGATTCCTCTTCCTTCCAAACCACACTGGTTTCTTCTATTTGGTGCTACTAAGGAGGACATCAAAGAGATCTGTATTAACACAATGAAGTTGTATTCTAGAGAAAAGCCTCACAGTGAACAGCTTGAGAGGCAGGTGGAGAAGAGGAAAATATTCCTGGAGGAGGCCAGACTAAAAGCCAGAGGCCAGAATCCCAATGGCACACCAGCTCTCGCCTCCATTAATGGATTTTCCCCTGCGTCCAAACCCTcTTCTCCCCGAGATGTGAAGATGGATGATAAATCTCCAAACTCTAAACTAAAGGAGCCAGAGAACAGACAGTTGTTTGCCAAAAGCCCACTGAATGGAAGTATAAAAAAGGAGGACGGCAAAGTGTTTCAGAATGGCAAGAACCACAGCCGGTCCCGATCTCGCTCTACGTCTCGTTCTCCACACAGACATCGAAGGAGCCACTCAGGAACGTACAGCTCTCACAGCAGCCACAGTCCGTCTCCACGTCAAAAAGCCAGAAGACCGTCACCCATCAGCCAACTCAGGACAGACCGAGACCGACCCAGCGAAACCAGCCGTCACTCTAACAAGAGGAGGAGGTCACGGAGCAGATCTCGCAGCAATTCAAGAGAAAGAGTCCGCGATCGTGACTACATCAAACACAAACAGGAGGGCAGCGGCTCAGGGCACCACTGGGACCATCGGGACCGTGAGCGTGACCGTTCACGTGATCATGGACGAAACAAGCGCCAGAGCCGATCACATTCTGGACACAGTCATAGCAGACACAGGAGATGAAGCACAATTATGGACAACAGGACAAGACTAACGCTTGCTTCGAAACGCTGTTGTTTATTAACTGGTTAAGAAGTGGATGTTCTATCAATGTTACTCTTCTTGCATCTGACCGGTTCAGTTGGGCAAGGTAGTGGTGCCTTTTTATGTATTTGacaatttaaaaaagtgttttactTTAAACTTGAAAGTGAACAACAGACGGACTGATCAAAATCTGCCTCTATCAGGGAACACATTCGCACAGAGCAGACGATACCTGTGCATGTTcaatgtcttttctttttttcatcaaATGTACATATAAAGCCTATTTTTATGATGTCAGGAGACTTTGTATTCATCTTTCTCTGCAGAAAATAAAAAGGATATAACATTCTACAA
>TCONS_00032657
CCCATGGTGGTAAGTGTCACAGAAAACACCCGAACTCCTCAGGCACAAGACCCAGGAATCCCTCCCACCTCATTGGCTGGCCTTTTCGAGACTGCCAGCCAATCCAGTGAGAGCTCTCAGCGGAGGTTCTCTGAATGGAAGGCATTGGCTTTGCTGGGGGGCCaggatttctttttgttttttccagTTTATAGTTAgttgtacacttttttttttttttcctctctaaatccaaatatttttttttgatataCGGTATGTTACTGTTTTCATATGAATCCCTTTCATGTGAATtgttacagtaaatgatctgcCATATAGTTATTCTTGCCTCTCCTCATATCTTTTTGATTTGGCGTTTTAATTTTGACAAACTTTGCCATGACTCATTGCTCAAATATGTTCAAATTATATTAGCTCCTCCATCATGGTTACGTTTTAAAAACTGAGGGAAAGGACATGAAGTTAAGAGACTCCATAAGAAGCcatatatatatgagagagagagcatgGCAGGTGTTGCATAGGtgcttgtttgtgtttttcaggaACTATATGAATGATGCCCTCAGAACCAGTGCATTTGTGAGGTTTGAACCTGAGACCATTGCGTGTGCCTGCATTTACCTCGCTGCTCGAGTACTACAGATTCCTCTTCCTTCCAAACCACACTGGTTTCTTCTATTTGGTGCTACTAAGGAGGACATCAAAGAGATCTGTATTAACACAATGAAGTTGTATTCTAGAGAAAAGCCTCACAGTGAACAGCTTGAGAGGCAGGTGGAGAAGAGGAAAATATTCCTGGAGGAGGCCAGACTAAAAGCCAGAGGCCAGAATCCCAATGGCACACCAGCTCTCGCCTCCATTAATGGATTTTCCCCTGCGTCCAAACCCTcTTCTCCCCGAGATGTGAAGATGGATGATAAATCTCCAAACTCTAAACTAAAGGAGCCAGAGAACAGACAGTTGTTTGCCAAAAGCCCACTGAATGGAAGTATAAAAAAGGAGGACGGCAAAGTGTTTCAGAATGGCAAGAACCACAGCCGGTCCCGATCTCGCTCTACGTCTCGTTCTCCACACAGACATCGAAGGAGCCACTCAGGAACGTACAGCTCTCACAGCAGCCACAGTCCGTCTCCACGTCAAAAAGCCAGAAGACCGTCACCCATCAGCCAACTCAGGACAGACCGAGACCGACCCAGCGAAACCAGCCGTCAC
>TCONS_00033882
GCCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGGGTAGCCCATGGTGGTAAGTGTCACAGAAAACACCCGAACTCCTCAGGCACAAGACCCAGGAATCCCTCCCACCTCATTGGCTGGCCTTTTCGAGACTGCCAGCCAATCCAGTGAGAGCTCTCAGCGGAGGTTCTCTGAATGGAAGGCATTGGCTTTGCTGGGGGGCCaggatttctttttgttttttccagTTTATAGTTAgttgtacacttttttttttttttcctctctaaatccaaatatttttttttgatataCGGTATGTTACTGTTTTCATATGAATCCCTTTCATGTGAATtgttacagtaaatgatctgcCATATAGTTATTCTTGCCTCTCCTCATATCTTTTTGATTTGGCGTTTTAATTTTGACAAACTTTGCCATGACTCATTGCTCAAATATGTTCAAATTATATTAGCTCCTCCATCATGGTTACGTTTTAAAAACTGAGGGAAAGGACATGAAGTTAAGAGACTCCATAAGAAGCcatatatatatgagagagagagcatgGCAGGTGTTGCATAGGtgcttgtttgtgtttttcaggaACTATATGAATGATGCCCTCAGAACCAGTGCATTTGTGAGGTTTGAACCTGAGACCATTGCGTGTGCCTGCATTTACCTCGCTGCTCGAGTACTACAGATTCCTCTTCCTTCCAAACCACACTGGTTTCTTCTATTTGGTGCTACTAAGGAGGACATCAAAGAGATCTGTATTAACACAATGAAGTTGTATTCTAGAGAAAAGCCTCACAGTGAACAGCTTGAGAGGCAGGTGGAGAAGAGGAAAATATTCCTGGAGGAGGCCAGACTAAAAGCCAGAGGCCAGAATCCCAATGGCACACCAGCTCTCGCCTCCATTAATGGATTTTCCCCTGCGTCCAAACCCTcTTCTCCCCGAGATGTGAAGATGGATGATAAATCTCCAAACTCTAAACTAAAGGAGCCAGAGAACAGACAGTTGTTTGCCAAAAGCCCACTGAATGGAAGTATAAAAAAGGAGGACGGCAAAGTGTTTCAGAATGGCAAGAACCACAGCCGGTCCCGATCTCGCTCTACGTCTCGTTCTCCACACAGACATCGAAGGAGCCACTCAGGAACGTACAGCTCTCACAGCAGCCACAGTCCGTCTCCACGTCAAAAAGCCAGAAGACCGTCACCCATCAGCCAACTCAGGACAGACCGAGACCGACCCAGCGAAACCAGCCGTCAC
>TCONS_00032658
GCCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGGGTAGCCCATGGTGGTAAGTGTCACAGAAAACACCCGAACTCCTCAGGCACAAGACCCAGGAATCCCTCCCACCTCATTGGCTGGCCTTTTCGAGACTGCCAGCCAATCCAGTGAGAGCTCTCAGCGGAGGTTCTCTGAATGGAAGGCATTGGCTTTGCTGGGGGGCCaggatttctttttgttttttccagTTTATAGTTAgttgtacacttttttttttttttcctctctaaatccaaatatttttttttgatataCGGTATGTTACTGTTTTCATATGAATCCCTTTCATGTGAATtgttacagtaaatgatctgcCATATAGTTATTCTTGCCTCTCCTCATATCTTTTTGATTTGGCGTTTTAATTTTGACAAACTTTGCCATGACTCATTGCTCAAATATGTTCAAATTATATTAGCTCCTCCATCATGGTTACGTTTTAAAAACTGAGGGAAAGGACATGAAGTTAAGAGACTCCATAAGAAGCcatatatatatgagaga
>TCONS_00032659
CCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGAGGAGACATTGGATCAGGTTTTTGGTTGGACTTATGCTCTGTTTCCACTAGTAGCTTTCTTTATTTGCTAAGAGCTTGACCTTTTGTGAAAGAGCTTGAAACTTAGATATCAACAGGACCTAGTGGAAACACTGCATTATAAAGCATGAAATGCATTGTAGCTTGGTATGCCTAAAGGTAAGATTAGGTTCACACTATTCAGTCTTCTTTGTCAATGCAGGATAA
>TCONS_00032660
CCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGGTAAGTGTTTTCATCTACCTCTGGACTTTATGGAAATGCCCTTTAAATTATGACTTGGAATTTTTTCCCCTTATAGAGGAGACATTGGATCAGGTTTTTGGTTGGACTTATGCTCTGTTTCCACTAGTAGCTTTCTTTATTTGCTAAGAGCTTGACCTTTTGTGAAAGAGCTTGAAACTTAGATATCAACAGGACCTAGTGGAAACACTGCATTATAAAGCATGAAATGCATTGTAGCTTGGTATGCC

Function

symbol description
ccnl1b Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA processing; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription, DNA-templated. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to several human genes including CCNL1 (cyclin L1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4813 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA processing; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription, DNA-templated. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to several human genes including CCNL1 (cyclin L1).

Ensembl:

ensembl_id ENSDARG00000012140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032656 False 2025 mRNA 0.47 11 36664173 36674005
TCONS_00032657 False 1218 processed_transcript 0.45 6 36664770 36671158
TCONS_00033882 False 1895 lncRNA 0.46 11 36664770 36673919
TCONS_00032658 False 1180 processed_transcript 0.44 6 36670656 36673919
TCONS_00032659 False 896 lncRNA 0.45 6 36671252 36673918
TCONS_00032660 True 919 lncRNA 0.44 5 36671305 36673918

Neighbor

gene id symbol gene type direction distance location
XLOC_016630 CT027583.2 coding downstream 5472 36632676 ~ 36658701 (-)
XLOC_016629 tradv41.0 coding downstream 59584 36604152 ~ 36604589 (-)
XLOC_016628 tradv40.0 coding downstream 61221 36602489 ~ 36602952 (-)
XLOC_016627 tradv36.2.12 coding downstream 63230 36600510 ~ 36600943 (-)
XLOC_016626 tradv23.3.8 coding downstream 65129 36598554 ~ 36599044 (-)
XLOC_016632 CT027583.1 coding upstream 41505 36715510 ~ 36739594 (-)
XLOC_016633 NA coding upstream 73173 36747178 ~ 36826293 (-)
XLOC_016634 slitrk3b coding upstream 141479 36815484 ~ 36819624 (-)
XLOC_016635 NA coding upstream 212738 36886743 ~ 36905394 (-)
XLOC_016636 si:dkey-193b15.5 coding upstream 233131 36907136 ~ 36914281 (-)
XLOC_016619 NA non-coding downstream 238570 36379239 ~ 36425603 (-)
XLOC_016555 NA non-coding downstream 585535 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 930421 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 1042306 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2556188 34106830 ~ 34107985 (-)
XLOC_016638 NA non-coding upstream 258694 36932699 ~ 36933692 (-)
XLOC_016643 NA non-coding upstream 462663 37136668 ~ 37140483 (-)
XLOC_016644 NA non-coding upstream 479754 37153759 ~ 37155791 (-)

Expression


Co-expression Network