XLOC_016644


Basic Information

Item Value
gene id XLOC_016644
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37153759 ~ 37155791 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033887
GTGGACATTTatctaaaaaatgctggaaaaCAGCAGGTAGGGCTCTTTCAGTGCTGTCTaaaggtgcgtcccaaatcgcatacttatgcaatATTCTATGCCATTTTCCATTGTAAATAGTtttagtgtgttcacactgaaatattcttaaagtatatttttaaaaaatctgatggacaggtggatggatggatgtcctTCTGAGATGAAGAAGTGGTGGTTGGTACAGATTGTAATTAGGCCTCGTCTGTcagctttttctttttcagataatGGAGAGAGAGCAGGCAAAAAGGAAGACTCACCAGAGCATCAgtggacaattttttttctttttttggtgctGTCTTTGTTTTTTGCAGGTTGGGGTAgagcagaagaaggagactcacaaTGAGAACGGTGGAGATATACTTGATCTAGAGCTCCTGAAGCAGGTAGAACTGGTTGAACAATCTGAACAACGGAGCAAGCTTTCAGAAAAATTTATTAAGATTAATTAAAGACTTAATATCTTTCGTTTTGGCAGACTGGCATGGAGCATGTGATGCAACAGGGAAACACCTCAGTAATGACAAGTACATCATAATTTAGGTACAGCcttaaaatatttagttgaatcaaattaacctataAAAACATATcgtaatttttacaaattaagtgATGGTCAGGTTTTcgttcagacagacagacagacagacagacagacagattgaatTGAACAATTAATATAACTATTAatattttctttgtcttttacagagtgGAGTGGAGAAACTAGGGAATCACATCTCAGCAATGATAAGAAACCGATAGTCAGGTATCACGTCAACGACAAATGTCCAAGAGGAAAGGTGGGGTGATGGGCTTGAGTCGGGCTCAGACTAAAGAAGTTTTAAAATCCTAACTGATAATAAGATCTGGTTGCAGCACACACGAGAAGAGTCTTCTGCGAATTTATTAGCctacctcaaatcttaaacgtgcacACACTACAAGATATGAAAACTGTGGCACACACAAGATTATCATGACCGATAATGCACATCACACTTTTtatcaataataacaatttattaatataCTAATATTAGACCAACTGCCACTACTGGCAAAACACTCTCATGCACTCAAAATACATTAGGTTCCTGTTTGTGTAGCTGTTAGTGGCGGTTATAAGGTTAAATAAACGGTGACCAATATGAAATATGTCAAATGTCGAATAATAAGAATAGGCTTATAATCTGTCCATCGTGCCACGATGCGCTGTGCTTTCTaattcaaaagcaaaattgtTACCTGTTTTGCAAtttctaaaagcacattttaatgctTAACCATTTTGTTTTTTGGTGATAACTAGCAATGTAGTAGGCATAGCTACCCAGCTACATCTGGGTCATAAATATTTACGCACACAGAATAATAACATTAGTGTCACGACTCGGCTCACTTCACACTCATAAAAGCACTAGATCGCAGAAAtgatcaaaacacatttatttacataacACTCGCTGGAACATCGACACGCAGGAATCATGGGTTGACGACAACATGGAATGAAGTGTAGGAATAACTTGAAACTAATGAACATCAAGAAACTGCGGGAAACAGAACAAAGGAGCACTTGATCACAACAGAACCACAAGGGAAAACACAGGAGCACATGGAACACACTGGGAAGTCACATGACGCAAACATAAGCACATGGGACACAACACAGACCCTGACAGTCTGTGGCTAtgaaaaatgatcatttaaacttattatcaatttatttattttgtaaaatggaTGTGATTCTCCCTAGCTCTTCTTGTTAGTGATGCTTGGAGGCCGTTGTCACAACCACAAACGGAATAACTCgcttttttattacttattattattttcgtAATATTTGACCAACTGTCACTATAGGAAAACACTAATAGCCTAAACACTAATCAAAACAGGCTACATTATGTCTCAGTTTGCATAGCTGTTCATGCAGTTAacctataaaaataaacaaacacacaaggtaA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033887 True 2033 lncRNA 0.37 1 37153759 37155791

Neighbor

gene id symbol gene type direction distance location
XLOC_016643 NA coding downstream 13276 37136668 ~ 37140483 (-)
XLOC_016642 elavl1a coding downstream 19561 37123338 ~ 37134198 (-)
XLOC_016641 zgc:101744 coding downstream 50137 37089362 ~ 37103622 (-)
XLOC_016640 diras1b coding downstream 93793 37059304 ~ 37059966 (-)
XLOC_016639 gng7 coding downstream 109854 36990024 ~ 37043905 (-)
XLOC_016645 NA coding upstream 1410 37157201 ~ 37157600 (-)
XLOC_016646 NA coding upstream 16017 37171808 ~ 37172825 (-)
XLOC_016647 apoda.1 coding upstream 52008 37207799 ~ 37210397 (-)
XLOC_016648 nadkb coding upstream 111450 37267241 ~ 37281748 (-)
XLOC_016649 skila coding upstream 151535 37307326 ~ 37353098 (-)
XLOC_016638 NA non-coding downstream 220067 36932699 ~ 36933692 (-)
XLOC_016635 NA non-coding downstream 248365 36886743 ~ 36905394 (-)
XLOC_016633 NA non-coding downstream 327466 36747178 ~ 36826293 (-)
XLOC_016619 NA non-coding downstream 728156 36379239 ~ 36425603 (-)
XLOC_016651 BX511231.1 non-coding upstream 249560 37405351 ~ 37409157 (-)
XLOC_016652 NA non-coding upstream 257613 37413404 ~ 37416465 (-)
XLOC_016662 NA non-coding upstream 657872 37813663 ~ 37815373 (-)

Expression


Co-expression Network