XLOC_016640 (diras1b)


Basic Information

Item Value
gene id XLOC_016640
gene name diras1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37059304 ~ 37059966 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032673
GTCTAGAACGTCAGTGGCTCAATCAAAGGCCCAAGATGCCTGAGCAGAGCAACGACTATCGTGTGGTGGTGTTTGGAGCAGGAGGTGTGGGCAAGAGCTCGCTAGTGCTCCGTTTTGTGAAAGGAACCTTCAGGGACACCTACATCCCGACGGTGGAAGACACTTACCGGCAGGTGATCAGCTGTGACAAGAGCGTCTGCACCCTGCAGATCACAGACACCACCGGGAGCCACCAGTTCCCTGCCATGCAGCGTCTGTCCATCTCCAAGGGTCACGCCTTCATCCTGGTCTACTCCATCACCAGCAAACAGTCCCTGGAAGAATTGAAGCCCATATACCAGCAGATACTCGCTATCAAAGGCAACGTAGAGAACATTCCTATCATGCTGGTGGGGAACAAGAGTGACGAAACACAACGGGAAGTGAAGACCGAAGATGGAGAAGCCCAGTCTAAGACCTGGAAGTGTGCTTTCATGGAGACCTCGGCTAAGACTAATCACAATGTCACTGAGCTCTTCCAGGAGCTGCTCAACTTGGAGAAGAAGAGGAGCATGAGTTTGAACATCGATGGCAAGCGTTCTGGGAAGCAAAGCAGGGCTGACAAGCTGAAGGGGAAATGCAGTGTCATGTAGACTTGCTTATAAGAAGCAAAAGCAGAACATG

Function

symbol description
diras1b Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; diencephalon; hindbrain; retinal ganglion cell layer; and telencephalon. Orthologous to human DIRAS1 (DIRAS family GTPase 1).

GO:

id name namespace
GO:0061551 trigeminal ganglion development biological_process
GO:0048666 neuron development biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-620 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; diencephalon; hindbrain; retinal ganglion cell layer; and telencephalon. Orthologous to human DIRAS1 (DIRAS family GTPase 1).

Ensembl:

ensembl_id ENSDARG00000009372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032673 True 663 mRNA 0.52 1 37059304 37059966

Neighbor

gene id symbol gene type direction distance location
XLOC_016639 gng7 coding downstream 15399 36990024 ~ 37043905 (-)
XLOC_016638 NA coding downstream 125612 36932699 ~ 36933692 (-)
XLOC_016637 zgc:153654 coding downstream 127051 36914408 ~ 36932253 (-)
XLOC_016636 si:dkey-193b15.5 coding downstream 145023 36907136 ~ 36914281 (-)
XLOC_016635 NA coding downstream 153910 36886743 ~ 36905394 (-)
XLOC_016641 zgc:101744 coding upstream 29396 37089362 ~ 37103622 (-)
XLOC_016642 elavl1a coding upstream 63372 37123338 ~ 37134198 (-)
XLOC_016643 NA coding upstream 76702 37136668 ~ 37140483 (-)
XLOC_016644 NA coding upstream 93793 37153759 ~ 37155791 (-)
XLOC_016645 NA coding upstream 97235 37157201 ~ 37157600 (-)
XLOC_016633 NA non-coding downstream 233011 36747178 ~ 36826293 (-)
XLOC_016619 NA non-coding downstream 633701 36379239 ~ 36425603 (-)
XLOC_016555 NA non-coding downstream 980666 36076196 ~ 36078638 (-)
XLOC_016646 NA non-coding upstream 111842 37171808 ~ 37172825 (-)
XLOC_016651 BX511231.1 non-coding upstream 345385 37405351 ~ 37409157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34032 NA non-coding CI01000004 null 15106736 ~ 15160060 (+)
bowfin (Amia calva) AMCG00010572 diras2,LOC107560410,LOC107670053,LOC107736992,LOC107702570 coding CM030129.1 CM030129.1 35803224 ~ 35808390 (+)