XLOC_016652


Basic Information

Item Value
gene id XLOC_016652
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37413404 ~ 37416465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033890
AGGAAGTGGAGAGCAGTACTTTGGGAAGccctgctgttgctgctgctgctgctgctgagctTCTAGAGCACCTGGAGTCCAGATACTGAATCTCTGCTCACCTGCACTCAACTCAACTCTGATGCAGCACCAGGCTAACAACAATGAATAATGGTGCCCTGAAGATCAGCACAGTTTCTCTCACGAAATGTCTTCCTTCAGATTGTGGAGGAAGCTTCTACGAGAAGCTTGAGCTTGAGCCAGAATGGTTGGCCATCTTGAAACGACAGACAACCTTCAGAAGCCATCCCACAGTTTCCGGAACCCTCCGCTGGACAACAGACTGCACAGCAGAGACAAAACACATTACAATGATCACAGCTGCTTATTTTCTGATAGCTTGCTGATACCATATTCATTTGCATTTCTAAGTATTTTAGCTTCCTGTTCCTCTGCTTCTTGCAGGTGGGATTTCAGTCCATCAGACACACATCTACATCCTGGTGGGCGAAGCGGACAGACTTACAGGGAGGAGTTTGTAAACTTTTTTTGATGACTACAGAAATTTCAAAAGAACTGCATTTGCCGGAATTAAAAATGCAAGAAATTATAAATGACTTTATCCTCACTTTTGTTCATAGTATCCTTGTTAAATAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033890 True 639 lncRNA 0.44 3 37413404 37416465

Neighbor

gene id symbol gene type direction distance location
XLOC_016651 BX511231.1 coding downstream 4247 37405351 ~ 37409157 (-)
XLOC_016650 prkci coding downstream 11804 37365551 ~ 37401600 (-)
XLOC_016649 skila coding downstream 60306 37307326 ~ 37353098 (-)
XLOC_016648 nadkb coding downstream 131656 37267241 ~ 37281748 (-)
XLOC_016647 apoda.1 coding downstream 203007 37207799 ~ 37210397 (-)
XLOC_016653 si:dkey-57k2.7 coding upstream 32829 37449294 ~ 37458527 (-)
XLOC_016654 si:dkey-57k2.7 coding upstream 44175 37460640 ~ 37462462 (-)
XLOC_016655 si:dkey-57k2.6 coding upstream 46951 37463416 ~ 37465517 (-)
XLOC_016656 dapk3 coding upstream 53111 37469576 ~ 37478418 (-)
XLOC_016657 arhgef18a coding upstream 87779 37504244 ~ 37537904 (-)
XLOC_016646 NA non-coding downstream 240579 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 255804 37157201 ~ 37157600 (-)
XLOC_016644 NA non-coding downstream 257613 37153759 ~ 37155791 (-)
XLOC_016643 NA non-coding downstream 272921 37136668 ~ 37140483 (-)
XLOC_016662 NA non-coding upstream 397198 37813663 ~ 37815373 (-)
XLOC_016680 NA non-coding upstream 727697 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 776494 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1954346 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 2193856 39610321 ~ 39612464 (-)

Expression


Co-expression Network