XLOC_016650 (prkci)


Basic Information

Item Value
gene id XLOC_016650
gene name prkci
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37365551 ~ 37401600 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032689
CCCCCTCCACATTCCGCTGTTTGGATCAGTCCGTCTCGAGGCCTGCGCGACAGAAGAAGGGAGTGTTTCCCCGTCTGACAGAACTTCTAGTAGTCCGATTAATTTCCGTCTGAACTTCACTAATTATATTTCAGCCAGGCTGTTTATTTAACCGGAGACGGCACTATTGCTGTCCAAAGAATACGTTTAGTTTTAAAACTCCGGTAGTTTTTCCTCGTCAGACGATAGCTGGCTAGCATCATTAGCTAAGCTAGCAGGAGTACGGATAGTCCATAATGCCCACGCTGCGGGACAGCACCATGTCCCACCCCGGAGAAAACCCGCACCAAGTCCGGGTAAAAGCCTACTACAGAGGgGACATCATGATCACACATTTTGAGCCTTCGATCTCCTATGAGGGACTCTGCAATGAGGTGCGGGATATGTGCTCCATGGACAATGACCAGCTCTTCACCATGAAATGGATTGATGAGGAAGGGGATCCATGCACCGTTTCTTCTCAGCTGGAGCTGGAGGAGGCCTTGCGTCTATATGAACTCAACAAAGACTCGGAGCTCATTATTCACGtgtTTCCTTGTGTCCCTGAAAAACCTGGCATGCCCTGTCCTGGAGAAGACAAGTCTATATACCGGCGGGGAGCTCGACGTTGGAGGAAACTCTACTATGCCACTGGACATGCGTTTCAGGCCAAACGCTTTAACAGGCGTGCTCATTGTGCCATCTGCACAGATCGTATCTGGGGTCTGGGCAGGCAGGGATACAAGTGTATCAACTGTAAGCTTCTGGTGCATAAGAAATGCCATAAGCTGGTCACAGTAGAATGTGGTAGACAGGTAATACAGGACCCAATGATCGGAAGAATCGATCCAGGGTCGACTCATCCAGAGCACCCAGATCAAGTTCTGGGCAAAAAGAACTCAACAGAAAGCATCAATCATGAGGGAGAGGAGCATGAGGCTGTGGGCAGTCGGGAATCAGGAAAAGCGGTGTCCAGTTTGGGTCTAATAGACTTTGACCTGCTGCGAGTGATTGGCAGGGGCAGCTATGCCAAAGTTCTGCTGGTGCGTCTCAAAAAGACAGAACGCATCTATGCCATGAaggtggtgaagaaggagctggtCAACGATGACGAGGATATTGACTGGGTTCAGACTGAAAAGCATGTGTTTGAGCAGGCTTCAAACCATCCCTTCCTTGTGGGACTTCACTCCTGCTTCCAGACGGAGAGCAGACTGTTCTTTGTAATCGAGTATGTGAATGGAGGGGATCTCATGTTCCACATGCAGCGGCAGAGGAAACTTCCGGAAGAGCACGCCAGGTTTTACTCTGCAGAGATCAGTCTTGCCTTGAACTACCTCCATGAGCGTGGCATTATTTACAGGGACCTGAAACTGGACAATGTTCTGCTGGATTCAGAGGGACACATCAAACTCACCGATTACGGCATGTGTAAGGAGGGACTGAGACCAGGAGATACAACCAGCACTTTCTGTGGAACTCCCAATTACATTGCACCAGAGATTCTGAGAGGAGAAGACTATGGTTTTAGTGTGGACTGGTGGGCTCTGGGCGTCCTGATGTTTGAGATGATGGCTGGAAGATCTCCCTTCGACATAGTCGGCAGCTCTGATAACCCTGACCAAAACACAGAGGATTATCTTTTCCAAGTCATTTTGGAGAAGCAGATCAGAATTCCCAGATCGTTATCGGTCAAAGCCGCAAGCGTGCTGAAGGGATTCCTCAACAAGGAGTCGAAGGAACGGCTGGGATGTCATCCTCAGACAGGCTTCGCAGACATCATGGCCCATCCTTTTTTCCGAAATGTAGACTGGGATCTTATGGAGCAGAAGCAAGTAGTTCCACCGTTCAAACCTAACATCTCGGGCGAGTTTGGTCTGGATAACTTTGATGCCCAGTTCACCAACGAGCCCATTCAGCTCACGCCTGACGATGATGATGCTGTAAAGAAGATCGACCAGTCTGAGTTTGAAGGCTTCGAGTACATCAACCCTCTGCTGATGTCTGCGGAGGAGTGTGTGTGAACGGTCGCTTTATCCCTCTGTTACACGCATATCATCGCTGCCTTTATTTGCATGGTCGCAAACAATCACACGAAAGGAAACAACAAGAACCTGACTTTGCTTTGTTGGGACCAGATGAAACAGTAACTTTGCCAAATGTCTTTCACTTTCTGCCATTTGTAACCACTAGTCCTTAAGTgtctatttttttctcaattatttTTGTATCATGTTAATCAGCAGCACTGATGAAAGGACATTTGTCAGTGCCTTCGACCAACAGTTTTAGCTTTCCGGACTCTGCAAACTAAAGGAAAAAAGAATGACTGTGATGGTACGCAGGACCTCCCAATGCTAAagatatgcattttattttgtaaatatgaaaGAGAATCCTTTGAGCATATATAGTAAGCCATTTTAAAACTCTATACCACATGGGATATTCTTGAAGAAAGTTTCTGATTATCTGTTTTCTGTAGCGTAAGGATGAGAACACTTTGttttattactatattttttatttaagagtACTGTCATCTATATAGAATGTACACAATGTGTTGAATCAGAGTTTTCCAGATGTTGTTTTAAGACGGTTGGACTTGTTTCCTCGTTTTAGATTGAAGATTGATTGGAGCAGGGAACATTATTGAACACTGTTGTAGATACTTACAACTGTGAATGGAGGAGACATTTTCTGTATAGAGAGGTGAAAACACAACAGCTTTCTTCAATGCAGGACCAAAATAAGACACTAAAATGAGTGTTCCTCTTGGCGATCTCCAAACAGACGAGGTAAACGCATGTTACTACTCTAACTGCAGCATGTATAAACTATTTCTTGCTTTCTTGTTTGATTTCTTGCTCTTTTTCTTgtgttaaatgttatatattgCCTTTCTGGTTATGATATTCCGTTGATGTATTTTTGCATTGAACAAACTGAGCATCGGTGAGCATTGTTTTTCGATACAGTCACCGAAAAGTGGCTTCTTTCAGCCCTTTTGGGGATTTCAAGCCTGATCAGATGCATGATGAGGTTTGTGTTTACTCCACACGGCGCCCGGTTTTTGGGGTGATgcgtttttttaaacatcatgtcTGGACGTGTTTTTTGTTTGTGGACTAAACTGAAAGGACCTTTGACCATAATGACCAAATGATGACATTAAACAGGCTACTCGTATGCAGCATCACCCTCTCTCATTCCACTCCATGCACGCTTCAACTCGCTTACTATTTCACAGATGTTCACACCGGTTTGGAGCTGCGAGGATCTCGTTAGCAACCCGGCGTTAGAAATGATTGAATCGCTTAAGGCCCTCGATGCATtcccagaaaaaagaaaatgatgtgCTAATATGCTTTAAAGAAGCATCGGGGGGCTGAATTGGacctgtttttttcttctctctgtatGTTTTGTGTATTAATATGCACACTGAAAAACACTATCAACTGACTGGAATAATAAACTGTACCACTTATTTTGTTAACACCTCATTAAAGTATTTAAGAAAATCTCA
>TCONS_00032690
CACAAATGAGGTCAATAGAAGCAAGTTAAATCACCAGAAAAGCAGCAATATGAAGATCCTCTTTTTTAGTCTAATATTGTACATAATACTTTTTCGGTTTTATTCATACAAAGACCAGATGAATATCAAATTAGACTGTTAGCAAACTATTAGCTGGACAATTAGAGCAAAAAAGAACtaaaatatatcttatttcttCTCACTGACATTCAGTCCTTTTTTTTGTAGGAGTCGAAGGAACGGCTGGGATGTCATCCTCAGACAGGCTTCGCAGACATCATGGCCCATCCTTTTTTCCGAAATGTAGACTGGGATCTTATGGAGCAGAAGCAAGTAGTTCCACCGTTCAAACCTAACATCTCGGGCGA

Function

symbol description
prkci Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035778 pronephric nephron tubule epithelial cell differentiation biological_process
GO:0001738 morphogenesis of a polarized epithelium biological_process
GO:0007502 digestive tract mesoderm development biological_process
GO:0007507 heart development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0021591 ventricular system development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007275 multicellular organism development biological_process
GO:0042476 odontogenesis biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0001841 neural tube formation biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0045217 cell-cell junction maintenance biological_process
GO:0006468 protein phosphorylation biological_process
GO:0034332 adherens junction organization biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0007097 nuclear migration biological_process
GO:0030031 cell projection assembly biological_process
GO:0007405 neuroblast proliferation biological_process
GO:0016310 phosphorylation biological_process
GO:0007420 brain development biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0048699 generation of neurons biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0016332 establishment or maintenance of polarity of embryonic epithelium biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005915 zonula adherens cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly
ko04144 Endocytosis
ko04530 Tight junction
ko04611 Platelet activation
ko04910 Insulin signaling pathway
ko05165 Human papillomavirus infection
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-011105-1 Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

Ensembl:

ensembl_id ENSDARG00000021225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032689 False 3550 mRNA 0.45 18 37365551 37401600
TCONS_00032690 True 368 lncRNA 0.38 2 37370142 37372386

Neighbor

gene id symbol gene type direction distance location
XLOC_016649 skila coding downstream 12453 37307326 ~ 37353098 (-)
XLOC_016648 nadkb coding downstream 83803 37267241 ~ 37281748 (-)
XLOC_016647 apoda.1 coding downstream 155154 37207799 ~ 37210397 (-)
XLOC_016646 NA coding downstream 192726 37171808 ~ 37172825 (-)
XLOC_016645 NA coding downstream 207951 37157201 ~ 37157600 (-)
XLOC_016651 BX511231.1 coding upstream 3751 37405351 ~ 37409157 (-)
XLOC_016652 NA coding upstream 11804 37413404 ~ 37416465 (-)
XLOC_016653 si:dkey-57k2.7 coding upstream 47694 37449294 ~ 37458527 (-)
XLOC_016654 si:dkey-57k2.7 coding upstream 59040 37460640 ~ 37462462 (-)
XLOC_016655 si:dkey-57k2.6 coding upstream 61816 37463416 ~ 37465517 (-)
XLOC_016644 NA non-coding downstream 209760 37153759 ~ 37155791 (-)
XLOC_016643 NA non-coding downstream 225068 37136668 ~ 37140483 (-)
XLOC_016638 NA non-coding downstream 431859 36932699 ~ 36933692 (-)
XLOC_016662 NA non-coding upstream 412063 37813663 ~ 37815373 (-)
XLOC_016680 NA non-coding upstream 742562 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 791359 38192959 ~ 38194479 (-)

Expression


Co-expression Network