XLOC_016657 (arhgef18a)


Basic Information

Item Value
gene id XLOC_016657
gene name arhgef18a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37504244 ~ 37537904 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032698
CCCGAGTGTGTTTTTGCGTGTGAGCGAGCTGCACTTGTCGTAACCGACGGATGCTCAAGAAAAGAAACCGTCCGACAAAAGAGGACAGGAGTGTAAAGAAAAGAGCAAATACTGAAAACAGCATGAGAAAAAAAGTGGTTTCATTAGAAATGaTCTTCCTCTGAACTCCACATAAGAAAGTCTGAAGTAGAATATTCATCATACGCTTGGCTGTATCTGCTTCATGAGATACCAGGCATGACCCTCTCTCGGCACAGATAAACCTGCTTCCTCCAGCCTTCAACCTGGTTATTACTGTGTCCACAGaGCATAAGATGGATGATATTGATTATTACAGAAGCAAGCCTCTGGCAGAGGAATCAAATTTCCAGACCACAAACTATGACGCCATCAGTATTGACGAATGCCATTATAATGTGCTGCGTGACGATCTGGAGTCCGATGCTCGGGACTTTGAGGCTCCGACCTGGAGTTTAGCTGTTGACCCACAATATTTGAAAAACTTTTCCAAAGATGCCGTCAAAAGACAGGATGTAATACACGAGCTGATTCAGACAGAAATCAACCATGTGCGGACGCTAAAGATAGTTTTGAATGTGTACATTCGGGAGTTGCGTAACACCCTACAAATGGATGAGACACGACTGGAAAGGCTGTTTCCACAGGTGGAAAACCTGCTGGAGGTGCACCAGTTTTTCCTTGACAATCTTAAACTGCGAAGACTTGACTCTATGGAGCCTGGAAGCTCCCAGAATTACTGCATCCACAATCTTGGGGACATCCTTATCACACAGTTCTCTGGTGAAATAGGAAGCAGACTGCGGTACCTCTATGGCATGTTCTGCAGTCGTCACACCGATGCGGTCAACTTCTACAAAGACTTGATGCAAAACAACAAGAAGTTCCAAAATTTGATACGAAAAATATGTCAGCTGTCCATTGTACGGCGATTAGGAATACCAGAGATTATTCTCCTTATAACTCAGCGCATCACTAAGTACCCGGTTCTGTTTGAACGTGTCATTAAGTACACTGAAGATGAGTCAGAAGAACAAATGGACCTGATAAAAGGGCTGGACTTTCTGAAGGACACCATAGCACAAGTGAATGCTCATGTGGACGAGGCTGAGAAAGAGGCACGACTGAGAGAACTTAGCAGTAAACTGGAGCCCAAGTCCCAGGTGAAGATGACCAGTGGGAGGGTGTTTCGTCGAGAGGACATGCTGCAGGGAAAGAGGAAGCTGCTTCATGAGGGCATGCTCAACTGGAGGGTCACGAACAACAAAGGCAAAGGTGATAAGCATACAGATGTTATCGTCTTGCTGTTGTCTGATGTTTTGCTGCTTTTACTGGAGAAAGATTCCAGGCTTACCTTTGCCTCTCTGGACGGTAAGCCTGCTGTGATCTCTCTGCTGAAGCTCATTGTACGTGAAGCAGCTCACAACGAGAAGGCCATGTTTCTTATCTCAGCTTCTTTGGACACTCCTGAGATGTACGAGTTTCACACCTCCTCTGCAGAAGAGCGCAACACCTGGACAAACAAGATTTGGAAGGCAGTGGAGTGCTGTCCAGACGTAAAGGAAGAAGAGCCAGAAGAACTCCCTAAGAAGATCTGGGAATTTCAAAGAAAGCTGTGTGTGCACGATGCCTCGATAGAGCAGCACCTGACAGAGAAGCTGAAGTTATTCTCCAGCATAGCAGCTTCAGTGACTGGTGTTTCTGACACCTCGACGAGTGAGCGCCATCCGCTACGTGGGAATGCAGCAGAGCCCCTGCAGGGAGAACGACTACTCACCGGAGCCCTGAAAGATGTGGAGAATCTACAGAACTTGCTGGTGATGTGTGAGCAGGGCCCAACTCCTTTCACTAGTAAGGCAACAGATCTGGTCCTGAAGAAGCCCCATGCTGACACAGGCTTGGAGAACAATACTCACATGTTACCTGAAAatggtTTTGAGAGTTCAATGGAAAGCATGGGAGACAGAATTCAGGTGGCCAACCCAGACTTGGACCCTCAGCTAAGAGAACTTCATTTAAGTGAGAACCAGGAGCTGTCGGCAGATGAGAATTTGTCAGTTCACTTTCCTAAAGCAGAGTTTTATTCCACTGTATCTCAGTTGTCTCGGAAACTCTACAGCCTTCAGTCTGTGGTCCAGCAGCTAGAAAGCCACATCAAGGTTCAGCATGCCACTATTGAGGAGCTGAAGTCCCGACCACGGGGAAACTCTCTCTTGGAACAGGAAAAGCACCGGAACCTGCACAAGCAGAATGAGGAGCTGGCCAACTTCCAGCGGCTCCAGAACCAGCGCCTACAGGAGCAGAGACAGTGGGAGcaggagagagagaggcagatgCTGCAGGCTGAGGCCAGGGAGAAAGAgctgagggagagagagatggcATGCAGCAGACAGGAGGAAATGCTGGCTGGGGAAAAACAAGAACTGGCCCGGTGTAGAGAAGAATACCAGCAAGATCTGGAGAGGCTGCGAGAGTCCATGCGCTCTGTGGAGAAGGAGAAAGAAAAACTAGAGCTGCtgaaaaaatataagaaaaatgaGAATGTGTCTGCAGTCTATCCGCTTGAAAATGAACAGATACAGATACCCCCACCTTACCCTATGTTGAACATAGTTTCTCCAGGCTTCACAGAGAGGGCTCCTTTAGTTCCCCCACGCAGAGAGAGCATCACTGGTTCACTTGTTAAACCAGAAGTGCCCATCCACCTCATTAGCACCACCAACCAAACCCTCAAAGCTGGCTCTGTCCAACAGAAGATACCCACCAAACTTGCTGCTCAACCTAAAGGCAAAGAGAAGCACAGCAAACACAGGAACTCCCACCAACGCACCAACAGCGCAGCTGGCATAGAGGTGTCTCATGTCGTTCCCATCAAAGTTGCAGGAAGGGAGGGAGGCAGTTTAAAAGCCATCAGGTCCAGCAGTCCTCATCATCTCCATCCAGATTTATTTACCCATCCAGATAAGTTGTCCAGCTCCGTTTCTTCTCATTCAGGAAACTCCAGCCGGAAGCACAACCACAGTCATAACTCTCACACTACTAGCACACACAGCACCCATTCAGGACATCGTAAAACCAAAGACAGCCCAAATGCAgaagacatttttttcttttaattctccTGCGTGATCTGTGTGACTATAATACGGATGCAGAAAGTGACCGTTATTTCACAGACATGACCTACACTGGAGGAATTCATGTCTTTCAAAGAATTACAATCAATTCTTTTCTGCTTTTATTCTGACTTAAATTCTGTTGAATTGATATAAGGCATTTACACGGTTGGGTAAAAATAATCTATTTAGGAGGAAACTCGATCATACCTAGCTGAGAGAGTTTAATGGCTCTTATTAAATCGGTTTCATTTTTGTGGTCTTAACAGCTGACAGTATCTCTTAGTATCTGTAAAATCATGTTCCGATCCATTGCAGAGCAGTCATTAATGATTTGTCATTCCTGTAAATAGCcagttttagttatttatttattgtgattttaattCAGGGATGTTTGATCCtctaagccaggggtcaccaatctcggtcctggagggccagtgtccctgcagggtttagctctaaattgcctcaacacacctgcctggatgttccAATTATACCAAGTAAGACattgattggcttgttcaggtgtgtttgataagggttggagctaaaatctgcaggacactggccatccaggaacaagtttgatgctCTAAGCATTACACTGGAAAGTCTTATAATGGTAGATCTATTTAATGTGTGGAATATGGTTTGTTTAAAGTGTAAATGTCCTTTCTGGGCTTCTGTCAACTGGAAACTTGTTATATTTGAGCAAatattttctagtattttagaacAAATAGCCTTGAATGTTTTTCTATGACGGGATAGATGCGCTTCACTACTAGATGTAAAATGTATCATggcttatattatttttaatttcattcgaGTGAGATGCTGTTTAGCCTGGAAATGATGCTGTTGGGTCcctattttgtacattttttattttgagaaaatacCAATGGTCTTAATGAGCAATTGTACATTTATAAATGATGCAGAGCAAATACTGCTTTCTTGGTTCTCCAAAAGAGAAAGTTGTGCACTTTTAAGTGCTTGTTAACTGCTCAATTACAtgaacaaacataaaaa
>TCONS_00032699
GTGTGAGCGAGCTGCACTTGTCGTAACCGACGGATGCTCAAGAAAAGAAACCGTCCGACAAAAGAGGACAGGAGTGTAAAGAAAAGAGCAAATACTGAAAACAGCATGAGAAAAAAAGTGGTTTCATTAGAAATGaagaaagaaactcaaaggtttggaacctcCTGAGGGTaTCTTCCTCTGAACTCCACATAAGAAAGTCTGAAGTAGAATATTCATCATACGCTTGGCTGTATCTGCTTCATGAGATACCAGGCATGACCCTCTCTCGGCACAGATAAACCTGCTTCCTCCAGCCTTCAACCTGGTTATTACTGTGTCCACAGaGCATAAGATGGATGATATTGATTATTACAGAAGCAAGCCTCTGGCAGAGGAATCAAATTTCCAGACCACAAACTATGACGCCATCAGTATTGACGAATGCCATTATAATGTGCTGCGTGACGATCTGGAGTCCGATGCTCGGGACTTTGAGGCTCCGACCTGGAGTTTAGCTGTTGACCCACAATATTTGAAAAACTTTTCCAAAGATGCCGTCAAAAGACAGGATG
>TCONS_00032700
tttttttttttttttgtatctagaTCTTCCTCTGAACTCCACATAAGAAAGTCTGAAGTAGAATATTCATCATACGCTTGGCTGTATCTGCTTCATGAGATACCAGGCATGACCCTCTCTCGGCACAGATAAACCTGCTTCCTCCAGCCTTCAACCTGGTTATTACTGTGTCCACAGaGCATAAGATGGATGATATTGATTATTACAGAAGCAAGCCTCTGGCAGAGGAATCAAATTTCCAGACCACAAACTATGACGCCATCAGTATTGACGAATGCCATTATAATGTGCTGCGTGACGATCTGGAGTCCGATGCTCGGGACTTTGAGGCTCCGACCTGGAGTTTAGCTGTTGACCCACAATATTTGAAAAACTTTTCCAAAGATGCC

Function

symbol description
arhgef18a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa. Orthologous to human ARHGEF18 (Rho/Rac guanine nucleotide exchange factor 18).

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040516-14 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rho protein signal transduction. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa. Orthologous to human ARHGEF18 (Rho/Rac guanine nucleotide exchange factor 18).

Ensembl:

ensembl_id ENSDARG00000011157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032698 False 4184 mRNA 0.45 21 37504244 37537904
TCONS_00032699 False 554 mRNA 0.44 6 37526673 37537887
TCONS_00032700 True 389 mRNA 0.43 4 37526689 37532772

Neighbor

gene id symbol gene type direction distance location
XLOC_016656 dapk3 coding downstream 25826 37469576 ~ 37478418 (-)
XLOC_016655 si:dkey-57k2.6 coding downstream 38727 37463416 ~ 37465517 (-)
XLOC_016654 si:dkey-57k2.7 coding downstream 41782 37460640 ~ 37462462 (-)
XLOC_016653 si:dkey-57k2.7 coding downstream 45717 37449294 ~ 37458527 (-)
XLOC_016652 NA coding downstream 87779 37413404 ~ 37416465 (-)
XLOC_016658 insra coding upstream 7047 37544951 ~ 37632896 (-)
XLOC_016659 hiat1a coding upstream 118174 37656078 ~ 37684641 (-)
XLOC_016660 myo9b coding upstream 147018 37684922 ~ 37744951 (-)
XLOC_016661 nfatc4 coding upstream 237751 37775655 ~ 37803614 (-)
XLOC_016662 NA coding upstream 275759 37813663 ~ 37815373 (-)
XLOC_016651 BX511231.1 non-coding downstream 95087 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 331419 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 346644 37157201 ~ 37157600 (-)
XLOC_016644 NA non-coding downstream 348453 37153759 ~ 37155791 (-)
XLOC_016680 NA non-coding upstream 606258 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 655055 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1832907 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 2072417 39610321 ~ 39612464 (-)

Expression


Co-expression Network