XLOC_016659 (hiat1a)


Basic Information

Item Value
gene id XLOC_016659
gene name hiat1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37656078 ~ 37684641 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032703
ACGATGAGAAGGACAGGAAGTCGCATATCCTAGCGTGGATGCTAACGGTAAAGtgtgatatttagccacacctcGCGGGTCCAGCTCCCCCAAACAAGAATGGATATAAGTTAACGATGACTggagagaaaaagaagaaaaagcggCTGAACCGCAGCATTCTTCTAGCAAAGAAAATCATCATTAAAGATGGAGGCACTCCACAGGGCATTGGAGAGCCTAGTGTCTACCATGCGGTGGTGGTTATTTTCCTGGAGTTCTTCGCCTGGGGACTTCTCACCACTCCCATGCTTGCGgtCTTACGTCAGACATTCCCCCAGCACACATTCCTGATGAACGGACTTATTCATGGAGTCAAGGGCTTGCTGTCTTTCTTGAGTGCTCCATTAATTGGTGCTTTGTCAGATGTGTGGGGTCGGAAGTCCTTCCTGCTGCTCACGGTGTTCTTCACCTGCGCCCCCATCCCGCTCATGAAGATCAGCCCATGGTGGTATTTTGCAGTTATCTCCATGTCTGGAGTGTTTGCGGTCACATTCTCTGTGATCTTCGCGTATGTGGCTGATATCACGCAGGAGCATGAGAGGAGCACAGCGTATGGCCTGGTATCAGCCACATTCGCAGCCAGTCTGGTCACCAGTCCGGCGATCGGGGCGTATCTGTCTGAGGTGTACGGAGACACTCTAGTGGTGATCCTCGCCACGGCTATTGCTCTGCTGGACATCTGCTTCATCCTGGTGGCGGTTCCGGAGTCTCTGCCTGAGAAGATGAGACCAGCCTCTTGGGGAGCTCCTATTTCCTGGGAGCAGGCAGATCCATTCGCTTCTTTACGTAAGGTGGGCCAGGACTCCACAGTTCTCCTCATCTGCATCACAGTCTTCCTGTCCTACCTGCCTGAGGCGGGACAGTACTCTAGCTTCTTCCTCTATCTCAGACAGGTCATTGGATTTACATCAGAAACAGTTGCTGCGTTCATTGCAGTTGTGGGAATCCTGTCCATCTTGGCTCAGACGGTTGTCCTGGGGATCCTGATGCGCTCCATAGGGAATAAGAACACTATCCTGTTAGGCCTCGGCTTTCAGATCCTACAGCTGGCCTGGTATGGCTTTGGCTCTCAGCCCTGGATGATGTGGGCTGCTGGTGCCGTTGCTGCCATGTCCAGCATCACCTTCCCAGCAATCAGTGCCATTGTGTCCCGCAACGCAGACCCTGATCAGCAagGTGTGGTTCAGGGGATGATCACAGGAATCAGAGGACTGTGCAATGGTCTCGGTCCAGCGCTCTATGGCTTCGTCTTCTACCTGTTTCACGTGGAGCTCAGTGAAATGGACCCTGCAGAGAGTCCAGAAAAGGGTGTCAAACCCAACATGGCCAATCCCACAGATGAGAGTGCCATCATCCCCGGCCCTCCATTCCTGTTCGGGGCCTGTTCGGTGCTGCTGTCTCTGCTGGTGGCCCTTTTCATCCCAGAGCACAACGGCCTCAACCTGCGGCCTGGCAGCTACAAGAAGCACAACAACGGCGCACAGAGCCACTCACACAGCTCTCAAGGCGGACAATGCGAGGGCAAGGAGCCTCTACTGGAGGACAGCAGCGTATAACCACACTGATGAGGGGGGACGGGCACCCACCCCAAACCCCTCACACCTTCTTACACACCCTGTCCTGTTCCCCCCGCAGCTCAATAACATGAGCAGCAGGAGCCAAAGCACACTTTACAAGTGCGGAACTGGGCCAACCGGGAGCTGAACCTTGGCCCTGAGGAACAGGAAGAGGAGCGAAGGACATCTTGTCTTGCACAAGTGAGGAGAATTCAAGCAGACGCCCTTGTGATGACGGACTTGGTGAAGGTTTTCCTCATTTTTACTGTTacatagttttgttttttctccctTTCAGATTTTCAACAATGTAAATGTTCCTTGTCCCAAAGACCTGGTAACTGTAATAATAGGGAACATGTCTGTCGTGACGTCACAGGCTAACTTTTGATGTGCTGCTTTCTTACTGGTTCCTCTTGGTTTTGTACTTAACTGATCGAAAGGCACTTCTGGAGAAGAACGTGtcccttttgttttgttgttttgaggaaaagcaatcaagaaaagaCAAGAAAGAAGGTCATCTGCATCAATTCACGCAGATCTGTCATGTTTTTGATCAAATCACTTGTACCTTCTCTACATTTACATTGTGTCAAAATGCGTACAGGGGGAGATAAAGTTGCCTTTAAGGGACTTTTTATCGCAATCACCAAACCCAGATGACGACGTCGCTCTGAGAAGGGTCAATCGTATCGCTCTTTTTAAGAGCCTGCGCATATTTGGTTTGCTTTCATCGCAGTCGGAGCTCCCTGTGAACGTCAATACTGCCACCATATGACAGGCTTGCAGGATTACGAGTTTACTGACGGTGCGCATTAGTTGTCATATTTACCGCGAGCACTGACGTAGGCGGAACGGTGATTGGATGAGCTCCGCTAGATCCAGTCGATTAATATCACACATGCTGCTATATTGTAGGATGTACAAGGTTACAAAGTTCTGTGGTATTATGCTAGACTCTCAACGTGGTATTTCTATTAGAGCTGAGCTTTTTCCGGCACGTCGTTGTTATTTTAGACCTCCCCTGATTCTGTGGCCGATTTCTATTTGCggtgcttttttctttctttctggtgAGACAAACTTTGAGTACTTTTATCAGATCTCTCaaaatgaaaacttaattttCCAGAAAAAACCTCAAGTGCATTCAGAtcgcttttgtttttttgtttttttaaaccaatcTGTTTATTTGGTTTTAGGTGCCATACctatgactttatttctgtctgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtttttattcatttctgtaTTTCAGTTCCTGCTatttgtatactttttttttattactgttttcaGGACAAATTTACAAGATGTTTCACAGGCTTAGTCATTGTGAATTGGTTTTAAGCTAACATTTCGGACCATTTCCGTTCTTTGAAAATCTTACTTAAAATGGAGTGAaggatttttttcatgtttttgcaTTCATCTGTATGACCAAACTTGAAtggatttttttctgttgaatatctttctatctttctatctttcgTTCTCTTCAATGTTTTGTACCTGCAGATTCACTCCTCTCCACTAGCCACTAACTTGCAAAGAAATCTGGTGTTTGCCTCTGAAAAAAGCCAATTAATTTGTGCCTAAAATGTGCTCTAAAAGAATAGAAACCGTATATGTGAATGGTGAACCGGCTGTAAATATTAGGAACTAATTGAGAAActatttattaaaagtttattgATATTGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000013117

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032703 True 3342 mRNA 0.47 12 37656078 37684641

Neighbor

gene id symbol gene type direction distance location
XLOC_016658 insra coding downstream 23182 37544951 ~ 37632896 (-)
XLOC_016657 arhgef18a coding downstream 118174 37504244 ~ 37537904 (-)
XLOC_016656 dapk3 coding downstream 177660 37469576 ~ 37478418 (-)
XLOC_016655 si:dkey-57k2.6 coding downstream 190561 37463416 ~ 37465517 (-)
XLOC_016654 si:dkey-57k2.7 coding downstream 193616 37460640 ~ 37462462 (-)
XLOC_016660 myo9b coding upstream 281 37684922 ~ 37744951 (-)
XLOC_016661 nfatc4 coding upstream 91014 37775655 ~ 37803614 (-)
XLOC_016662 NA coding upstream 129022 37813663 ~ 37815373 (-)
XLOC_016663 mettl17 coding upstream 142926 37827567 ~ 37837472 (-)
XLOC_016664 si:ch211-284o19.8 coding upstream 166483 37851124 ~ 37864665 (-)
XLOC_016652 NA non-coding downstream 239613 37413404 ~ 37416465 (-)
XLOC_016651 BX511231.1 non-coding downstream 246921 37405351 ~ 37409157 (-)
XLOC_016646 NA non-coding downstream 483253 37171808 ~ 37172825 (-)
XLOC_016645 NA non-coding downstream 498478 37157201 ~ 37157600 (-)
XLOC_016644 NA non-coding downstream 500287 37153759 ~ 37155791 (-)
XLOC_016680 NA non-coding upstream 459521 38144162 ~ 38145701 (-)
XLOC_016681 NA non-coding upstream 508318 38192959 ~ 38194479 (-)
XLOC_016694 BX248328.1 non-coding upstream 1686170 39370811 ~ 39370927 (-)
XLOC_016697 NA non-coding upstream 1925680 39610321 ~ 39612464 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15561061_15573201 HIAT1A, MFSD14A coding CI01000004 null 15559909 ~ 15573201 (-)
bowfin (Amia calva) AMCG00010722 NA coding CM030129.1 CM030129.1 40061768 ~ 40076718 (+)