RNA id: TCONS_00032658


Basic Information

Item Value
RNA id TCONS_00032658
length 1180
RNA type processed_transcript
GC content 0.44
exon number 6
gene id XLOC_016631
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36664173 ~ 36674005 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATTTCCGCCTGGCAGACGAAAGGTCTACGTTTTGTGATAGCGAGTTACACCATCAAATATGTCTCTTGGCATGTTATCTCCTCATCTGAACACTCCACCACCAAATAACCAGGGCATTCTTATTGGCGATAAAGTGTATTCGGAGGTGTTTCTGGCCATCGACAACTCGATCATACCCGAGGACAGGCTGAGCACGACCCCGTCCATGCTGGATGGCCTCGACCATGAGACCGAGACAGACCTACGGATTCTGGGCTGCGAACGCATTCAGTCAGCCGGGATTCTCCTTCGTCTGCCACAGGTGGCGATGGCGACGGGACAAGTAATTTTTCAAAGATTCTTTTTCTCGAAGTCCTTCGTAAAGCACAACTTTGAGATTGTTGCTATGGCCTGCGTGAACTTGGCTTCAAAGATTGAGGAGTCGCCAAGACGAGTGAGGGATGTGATCAACGTTTTCCACCATTTGAAACAAGGAAAGGGTAAAAAGAGCACACCCCTCATTCTTGatcaaaattacattaatacCAAGAACCAAGTTATTAAAGCTGAGCGTCGTATCCTGAAGGAGCTGGGCTTCTGTGTTCATGTCAAACATCCACATAAGattaTAGTCATGTACCTGCAAGTGCTGGAATGTGAGAAGAATCAGATGCTGGTTCAAACAGCATGGGTAGCCCATGGTGGTAAGTGTCACAGAAAACACCCGAACTCCTCAGGCACAAGACCCAGGAATCCCTCCCACCTCATTGGCTGGCCTTTTCGAGACTGCCAGCCAATCCAGTGAGAGCTCTCAGCGGAGGTTCTCTGAATGGAAGGCATTGGCTTTGCTGGGGGGCCaggatttctttttgttttttccagTTTATAGTTAgttgtacacttttttttttttttcctctctaaatccaaatatttttttttgatataCGGTATGTTACTGTTTTCATATGAATCCCTTTCATGTGAATtgttacagtaaatgatctgcCATATAGTTATTCTTGCCTCTCCTCATATCTTTTTGATTTGGCGTTTTAATTTTGACAAACTTTGCCATGACTCATTGCTCAAATATGTTCAAATTATATTAGCTCCTCCATCATGGTTACGTTTTAAAAACTGAGGGAAAGGACATGAAGTTAAGAGACTCCATAAGAAGCcatatatatatgagaga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4813 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA processing; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription, DNA-templated. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to several human genes including CCNL1 (cyclin L1).

Ensembl:

ensembl_id ENSDART00000137738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033382 lncRNA downstream 245053 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033881 lncRNA downstream 592018 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 936904 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 937429 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 1048789 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033883 lncRNA upstream 73259 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00033884 lncRNA upstream 73259 36747178 ~ 36826293 (-) True XLOC_016633
TCONS_00033885 lncRNA upstream 212824 36886743 ~ 36905079 (-) False XLOC_016635
TCONS_00032664 lncRNA upstream 220958 36894877 ~ 36901771 (-) False XLOC_016635
TCONS_00032665 lncRNA upstream 220958 36894877 ~ 36905394 (-) False XLOC_016635
TCONS_00032655 mRNA downstream 11955 36632676 ~ 36658701 (-) True XLOC_016630
TCONS_00032654 mRNA downstream 66067 36604152 ~ 36604589 (-) True XLOC_016629
TCONS_00032653 mRNA downstream 67704 36602489 ~ 36602952 (-) True XLOC_016628
TCONS_00032652 mRNA downstream 69713 36600510 ~ 36600943 (-) True XLOC_016627
TCONS_00032651 mRNA downstream 71612 36598554 ~ 36599044 (-) True XLOC_016626
TCONS_00032661 mRNA upstream 41591 36715510 ~ 36739594 (-) True XLOC_016632
TCONS_00032662 mRNA upstream 141565 36815484 ~ 36818132 (-) False XLOC_016634
TCONS_00032663 mRNA upstream 141565 36815484 ~ 36819624 (-) True XLOC_016634
TCONS_00032666 mRNA upstream 233217 36907136 ~ 36914281 (-) True XLOC_016636
TCONS_00032667 mRNA upstream 240489 36914408 ~ 36918709 (-) False XLOC_016637
TCONS_00032643 other downstream 338325 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 342545 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032641 other downstream 345660 36324496 ~ 36324996 (-) True XLOC_016615
TCONS_00032640 other downstream 349435 36320760 ~ 36321221 (-) True XLOC_016614
TCONS_00032639 other downstream 352079 36318102 ~ 36318577 (-) True XLOC_016613
TCONS_00032691 other upstream 731432 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032743 other upstream 1530022 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 2388835 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 2696892 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 3061633 39735552 ~ 39752556 (-) True XLOC_016698

Expression Profile

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