Fish Transcriptome and Expression Database

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model fish

XLOC_016630 (CT027583.2)

Basic Information

Item	Value
gene id	XLOC_016630
gene name	CT027583.2
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	36632676 ~ 36658701 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032655
agatcaaaattagagaacaatatacaatttaaaattctggaaGCAGATGCAATTCACACTCTTACAGtttatacatattgTTCAAGTAtaACTTTGACAAGAATtaatttacaaaggCCCCTTCAGGCACATTGCGAATTCAAGCTGTGTGTCGTGGTCATGACAACACaaactttctccaagact

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114484

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00032655	True	186	mRNA	0.34	9	36632676	36658701

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_016629	tradv41.0	coding	downstream	28087	36604152 ~ 36604589 (-)
XLOC_016628	tradv40.0	coding	downstream	29724	36602489 ~ 36602952 (-)
XLOC_016627	tradv36.2.12	coding	downstream	31733	36600510 ~ 36600943 (-)
XLOC_016626	tradv23.3.8	coding	downstream	33632	36598554 ~ 36599044 (-)
XLOC_016625	tradv30.0.6	coding	downstream	34883	36597322 ~ 36597793 (-)
XLOC_016631	ccnl1b	coding	upstream	5472	36664173 ~ 36674005 (-)
XLOC_016632	CT027583.1	coding	upstream	56809	36715510 ~ 36739594 (-)
XLOC_016633	NA	coding	upstream	88477	36747178 ~ 36826293 (-)
XLOC_016634	slitrk3b	coding	upstream	156783	36815484 ~ 36819624 (-)
XLOC_016635	NA	coding	upstream	228042	36886743 ~ 36905394 (-)
XLOC_016619	NA	non-coding	downstream	207073	36379239 ~ 36425603 (-)
XLOC_016555	NA	non-coding	downstream	554038	36076196 ~ 36078638 (-)
XLOC_016553	NA	non-coding	downstream	898924	35728589 ~ 35733752 (-)
XLOC_016552	NA	non-coding	downstream	1010809	35615395 ~ 35621867 (-)
XLOC_016546	NA	non-coding	downstream	2524691	34106830 ~ 34107985 (-)
XLOC_016638	NA	non-coding	upstream	273998	36932699 ~ 36933692 (-)
XLOC_016643	NA	non-coding	upstream	477967	37136668 ~ 37140483 (-)
XLOC_016644	NA	non-coding	upstream	495058	37153759 ~ 37155791 (-)

Expression

Co-expression Network