XLOC_016634 (slitrk3b)


Basic Information

Item Value
gene id XLOC_016634
gene name slitrk3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36815484 ~ 36819624 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032662
ATGCACTTGGCTGCTTATGGTGAAAGCATGTTGTGGGTTACACTGCTAAGCACAATTGCACTTGGATGGACGACTCCTATCCCTCTACTTGATGATTCAGAGGAAATAGACGAGCCTTGCTTTGAGCCCTGCTACTGCGAAGTGAAGGAAGGCCTTTTTCATGTTCATTGTGACAGCAAAGGATTTACAAATATTAGCCAAGTCTCGCAGTCATGGCTTAGACCATTCAAGCTCTACCTGCAGAAAAACTCTTTACGGAAGCTCTACTTCAACAGTTTCCTGCACTTGAACAATGCAGTGGCCATTAATCTGGGCAATAATGCCCTGCAGGACATCCATGTTGGTGCTTTCAATGGTTTGGGCTCCCTGAAGAGGTTGTACCTTCATGAGAACAAGCTGGAAGTGTTCCGGAATGACACATTTCTTGGACTGGAGAGTTTAGAATACCTTCAGGCCGACTATAATGTTATCAAGAGAATAGACAGTGGGGCGTTCAGAAATCTCCACAAACTCAGAGTGCTCATCCTTAATGACAATTTAATACCCGTGCTACCGGCGTTTCTTTTCAGATCTGTCTCTTTAACCCACCTTGACTTGAGAGGCAACCGACTAAAGACGTTGCCTTATAAAGGGATTTTGGAATATATTGGCCGCAGTCTTATGGAGATCCAGTTGGAGGAGAACCCTTGGAACTGTATCTGTGATATCATCCAGCTCCAGGCCTGGTTGGAGCGGATTCCATACACTGCAGTTGTTGGTGAAATAACATGCGAGTACCCTTTCCACCTCCATGGAAAGGACCTCAGAGAAATCAAACGCAGCGAGCTTTGTCCCTTGTTGAACGAAGCTGAGATTGAGTCTATTCTAGGTGTCCTCCACTTGCCGTTCTACACAGGGAGAGCGAGGCCTACAAAGCCATCTTCTATTGTGTCCTCAAATCAAAACACTGTTTCCTCTGTGGAGCAAAGAGAAAGGCCCCCAAAGCCAACAAAAAGACCCCGACCCTCAAAGACACCTCCCACACCACGTAGCGTGTTCCCTAATCAGCCACCTGTAGCCGGATACCAGACAAGGCCACCAATACCAATCATTTGCCCGATTGGATGTACCTGTAACTTGCATATTAATGACCTTGGTTTAACAGTCAACTGTAAGGAAAATGGGTTTCGGAACATATCTGAGTTGATGCCTCGACCCTTGAATGCTAAAAAGCTTTACCTAAGTGGAAATCTCATCCAGAGAATTTACAAGTCAGATTTTTGGAATTTTTCCAGTCTTGATTTATTGCATTTGGGAAACAATCAAATATTTTATGTCCAAGAGGGGGCTTTTGTTAATCTCCCTAATTTGAGAAGCCTTTACCTGAATGGTAATAATATAGTGAAATTAACTATTGATATGTTTCATGGCTTGCATAGCCTTgagtatttatattttgaatacAATGAGATACGAGAAATCCAGCCCGCTGCCTTCAGTTTAATGCCCTCCTTGCAGCTAGTCTTTCTCAACAACAACCTCTTGCGAACGTTGCCCATGGGAGCATTCGAAGGTACCTCGCTGACACGTCTGAACCTGCGCAACAACTACTTTCATTGCCTCCCAGTCAGCGGCGTTCTGGAACACCTGCAAGCTGTAGTCCAGATCGACCTGAATCAGAACCCCTGGGACTGCTCCTGCGACATCATCCCTCTCAAAGAGTGGCTGGACACGCTGAGCTTAGTGGTCATAGTAGGAGAAGTGGCATGTAAGACCCCCGAGCTGGTCTCAGGAAAAGATTTGCGCACTCTGAATTCTGAAGTGATTTGCCCTGAGCTCAGACAGTCCTCACTGTCTCCTGCAGAATCAGATAGCGGGCTTATCACTACGTATCCCGAGGTGGGGCCGCATCCACCGAAAGGTGCCATACCCCTCTCGGTCTTGATTCTCAGCTTGCTGGTTCTGTTTGTGTCTGCCTTCTTTGCTGCTGCAGCTCTCTGCGCATATGCTCTGAAAAAGCGTGAAAAGCTTCCATTTAGGAAGCAAGGGGAAGTTGGCCTGGCAGGCATTCAGATGGAATGTGGAATATTCACAGAACAGCCATCTACCTTACCAGAGACTCCTCCTTCCAATCACGTGTACGATAGCATTGGTGCACCCTCCTCGCATATGTGCAGCAACACCGTTTACAAAAGCGGACAGGAGGAGTCAGGGCAGAAGCATCCATTCTCAGAGACAAAAGAGAGTGGGTCACACTACAGGACACTTGTGGAGAAAGAAAAGGAGTGGACCATGGCCATCTCCAGCTCCCCCATTAACACTATTGTGAGCGTTGGCGGGCCGTGTGGTGACATTGCCGGCTTTCGTGAAAACGGAATACTCTGCCCGACTGTCATTGATAGCCAAGGTCCCACACCCAAGGTGGGATTAGTGGACAGTCTTTTTGGCACAACTCCTCAGTTTAGCAACCTGCCTGACAGACACACGCACCCTCCCTCAGAGTATCCACATGCCAAACAGGATGCCAGACAAAAGCAAACGATCACAACCACCACAGGGACAAGGACAGGATGTCCTAATCAAACCCAAAGTGATTACCCTGAGCTGAGGGCTAGACTCAAAACAAAGATGGATTACATTGATATGCTGGATAGGTCATATCAATTCTAA
>TCONS_00032663
CGAAGTCCGAGGCAGCGCcatcctgtgatttttattttaatgccaaCTTGCATACTAGAGCCGGTTTAGTTTTTCTAACTGTTTCCAAGCGATCTGGCTCATCATCAGTCCTCACAGTGGTGCTGAACTGCAGCCCTCGCTGTCTTCACTGTTGAGCGCTCGTCAGGGGAGCGGACCTGCATCCTAAAGCAAACCTTTCTGAGACATTGCAGTCCTGTCACGTCTTCGGCTCTCCTATTTGCCTCCACCACGAGAGCGaggtgaagaagaagaagaagatgaagcTGCTCAGCGGTGGTGACATGGCAAGAAGCAGTATCATTTAAAGTGGACCATCTTCTGCTCTTTTAATTCCACTGCAGCAACCTGAtgcagtgaAGGAGCACTTGAGGCTATGCACTTGGCTGCTTATGGTGAAAGCATGTTGTGGGTTACACTGCTAAGCACAATTGCACTTGGATGGACGACTCCTATCCCTCTACTTGATGATTCAGAGGAAATAGACGAGCCTTGCTTTGAGCCCTGCTACTGCGAAGTGAAGGAAGGCCTTTTTCATGTTCATTGTGACAGCAAAGGATTTACAAATATTAGCCAAGTCTCGCAGTCATGGCTTAGACCATTCAAGCTCTACCTGCAGAAAAACTCTTTACGGAAGCTCTACTTCAACAGTTTCCTGCACTTGAACAATGCAGTGGCCATTAATCTGGGCAATAATGCCCTGCAGGACATCCATGTTGGTGCTTTCAATGGTTTGGGCTCCCTGAAGAGGTTGTACCTTCATGAGAACAAGCTGGAAGTGTTCCGGAATGACACATTTCTTGGACTGGAGAGTTTAGAATACCTTCAGGCCGACTATAATGTTATCAAGAGAATAGACAGTGGGGCGTTCAGAAATCTCCACAAACTCAGAGTGCTCATCCTTAATGACAATTTAATACCCGTGCTACCGGCGTTTCTTTTCAGATCTGTCTCTTTAACCCACCTTGACTTGAGAGGCAACCGACTAAAGACGTTGCCTTATAAAGGGATTTTGGAATATATTGGCCGCAGTCTTATGGAGATCCAGTTGGAGGAGAACCCTTGGAACTGTATCTGTGATATCATCCAGCTCCAGGCCTGGTTGGAGCGGATTCCATACACTGCAGTTGTTGGTGAAATAACATGCGAGTACCCTTTCCACCTCCATGGAAAGGACCTCAGAGAAATCAAACGCAGCGAGCTTTGTCCCTTGTTGAACGAAGCTGAGATTGAGTCTATTCTAGGTGTCCTCCACTTGCCGTTCTACACAGGGAGAGCGAGGCCTACAAAGCCATCTTCTATTGTGTCCTCAAATCAAAACACTGTTTCCTCTGTGGAGCAAAGAGAAAGGCCCCCAAAGCCAACAAAAAGACCCCGACCCTCAAAGACACCTCCCACACCACGTAGCGTGTTCCCTAATCAGCCACCTGTAGCCGGATACCAGACAAGGCCACCAATACCAATCATTTGCCCGATTGGATGTACCTGTAACTTGCATATTAATGACCTTGGTTTAACAGTCAACTGTAAGGAAAATGGGTTTCGGAACATATCTGAGTTGATGCCTCGACCCTTGAATGCTAAAAAGCTTTACCTAAGTGGAAATCTCATCCAGAGAATTTACAAGTCAGATTTTTGGAATTTTTCCAGTCTTGATTTATTGCATTTGGGAAACAATCAAATATTTTATGTCCAAGAGGGGGCTTTTGTTAATCTCCCTAATTTGAGAAGCCTTTACCTGAATGGTAATAATATAGTGAAATTAACTATTGATATGTTTCATGGCTTGCATAGCCTTgagtatttatattttgaatacAATGAGATACGAGAAATCCAGCCCGCTGCCTTCAGTTTAATGCCCTCCTTGCAGCTAGTCTTTCTCAACAACAACCTCTTGCGAACGTTGCCCATGGGAGCATTCGAAGGTACCTCGCTGACACGTCTGAACCTGCGCAACAACTACTTTCATTGCCTCCCAGTCAGCGGCGTTCTGGAACACCTGCAAGCTGTAGTCCAGATCGACCTGAATCAGAACCCCTGGGACTGCTCCTGCGACATCATCCCTCTCAAAGAGTGGCTGGACACGCTGAGCTTAGTGGTCATAGTAGGAGAAGTGGCATGTAAGACCCCCGAGCTGGTCTCAGGAAAAGATTTGCGCACTCTGAATTCTGAAGTGATTTGCCCTGAGCTCAGACAGTCCTCACTGTCTCCTGCAGAATCAGATAGCGGGCTTATCACTACGTATCCCGAGGTGGGGCCGCATCCACCGAAAGGTGCCATACCCCTCTCGGTCTTGATTCTCAGCTTGCTGGTTCTGTTTGTGTCTGCCTTCTTTGCTGCTGCAGCTCTCTGCGCATATGCTCTGAAAAAGCGTGAAAAGCTTCCATTTAGGAAGCAAGGGGAAGTTGGCCTGGCAGGCATTCAGATGGAATGTGGAATATTCACAGAACAGCCATCTACCTTACCAGAGACTCCTCCTTCCAATCACGTGTACGATAGCATTGGTGCACCCTCCTCGCATATGTGCAGCAACACCGTTTACAAAAGCGGACAGGAGGAGTCAGGGCAGAAGCATCCATTCTCAGAGACAAAAGAGAGTGGGTCACACTACAGGACACTTGTGGAGAAAGAAAAGGAGTGGACCATGGCCATCTCCAGCTCCCCCATTAACACTATTGTGAGCGTTGGCGGGCCGTGTGGTGACATTGCCGGCTTTCGTGAAAACGGAATACTCTGCCCGACTGTCATTGATAGCCAAGGTCCCACACCCAAGGTGGGATTAGTGGACAGTCTTTTTGGCACAACTCCTCAGTTTAGCAACCTGCCTGACAGACACACGCACCCTCCCTCAGAGTATCCACATGCCAAACAGGATGCCAGACAAAAGCAAACGATCACAACCACCACAGGGACAAGGACAGGATGTCCTAATCAAACCCAAAGTGATTACCCTGAGCTGAGGGCTAGACTCAAAACAAAGATGGATTACATTGATATGCTGGATAGGTCATATCAATTCTAA

Function

symbol description
slitrk3b Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; nervous system; and neuroepithelial cell. Orthologous to human SLITRK3 (SLIT and NTRK like family member 3).

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-352 Predicted to be involved in axonogenesis. Predicted to act upstream of or within regulation of presynapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; nervous system; and neuroepithelial cell. Orthologous to human SLITRK3 (SLIT and NTRK like family member 3).

Ensembl:

ensembl_id ENSDARG00000074739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032662 False 2649 mRNA 0.47 1 36815484 36818132
TCONS_00032663 True 3043 mRNA 0.47 2 36815484 36819624

Neighbor

gene id symbol gene type direction distance location
XLOC_016632 CT027583.1 coding downstream 75890 36715510 ~ 36739594 (-)
XLOC_016631 ccnl1b coding downstream 141479 36664173 ~ 36674005 (-)
XLOC_016630 CT027583.2 coding downstream 156783 36632676 ~ 36658701 (-)
XLOC_016629 tradv41.0 coding downstream 210895 36604152 ~ 36604589 (-)
XLOC_016628 tradv40.0 coding downstream 212532 36602489 ~ 36602952 (-)
XLOC_016635 NA coding upstream 67119 36886743 ~ 36905394 (-)
XLOC_016636 si:dkey-193b15.5 coding upstream 87512 36907136 ~ 36914281 (-)
XLOC_016637 zgc:153654 coding upstream 94784 36914408 ~ 36932253 (-)
XLOC_016638 NA coding upstream 113075 36932699 ~ 36933692 (-)
XLOC_016639 gng7 coding upstream 170400 36990024 ~ 37043905 (-)
XLOC_016619 NA non-coding downstream 389881 36379239 ~ 36425603 (-)
XLOC_016555 NA non-coding downstream 736846 36076196 ~ 36078638 (-)
XLOC_016553 NA non-coding downstream 1081732 35728589 ~ 35733752 (-)
XLOC_016552 NA non-coding downstream 1193617 35615395 ~ 35621867 (-)
XLOC_016546 NA non-coding downstream 2707499 34106830 ~ 34107985 (-)
XLOC_016643 NA non-coding upstream 317044 37136668 ~ 37140483 (-)
XLOC_016644 NA non-coding upstream 334135 37153759 ~ 37155791 (-)
XLOC_016645 NA non-coding upstream 337577 37157201 ~ 37157600 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_14999971_15002640 SLITRK3B coding CI01000004 null 14999275 ~ 15002640 (-)