RNA id: TCONS_00032653


Basic Information

Item Value
RNA id TCONS_00032653
length 345
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_016628
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36602489 ~ 36602952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACAAATGCATGCTATTGATTATTCTCATGGCATCAGATGTGACGGCTGTGGACAAAATTGAGCCAAACAGTGGGAGCAAAGTCATCAGAACAGAACGAGAGTCTGTAAAGCTGAGCTGCTCTTATGATTCAAATAATGAATATGTACGTCTATATTGGTACAGAAGACATTCAAGTGGAGAACttcaatatttattatataaaggaGCTCGATCAAACTCAGCCAAAGACACCTCTGATGCCCGATTTGAGTCAAGTACATCTCGCATATCCACTGACCTCATTATTAAGACTGCAGCTCTGTCAGATTCAGCTCTTTATTATTGTGCTCTAAGAGTTGAA

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-28 Predicted to be involved in response to bacterium.

Ensembl:

ensembl_id ENSDART00000165032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033382 lncRNA downstream 176886 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033881 lncRNA downstream 523851 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 868737 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 869262 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 980622 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033882 lncRNA upstream 61818 36664770 ~ 36673919 (-) False XLOC_016631
TCONS_00032659 lncRNA upstream 68300 36671252 ~ 36673918 (-) False XLOC_016631
TCONS_00032660 lncRNA upstream 68353 36671305 ~ 36673918 (-) True XLOC_016631
TCONS_00033883 lncRNA upstream 144226 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00033884 lncRNA upstream 144226 36747178 ~ 36826293 (-) True XLOC_016633
TCONS_00032652 mRNA downstream 1546 36600510 ~ 36600943 (-) True XLOC_016627
TCONS_00032651 mRNA downstream 3445 36598554 ~ 36599044 (-) True XLOC_016626
TCONS_00032650 mRNA downstream 4696 36597322 ~ 36597793 (-) True XLOC_016625
TCONS_00032649 mRNA downstream 92936 36509085 ~ 36509553 (-) True XLOC_016624
TCONS_00032648 mRNA downstream 102142 36499886 ~ 36500347 (-) True XLOC_016623
TCONS_00032654 mRNA upstream 1200 36604152 ~ 36604589 (-) True XLOC_016629
TCONS_00032655 mRNA upstream 29724 36632676 ~ 36658701 (-) True XLOC_016630
TCONS_00032656 mRNA upstream 61221 36664173 ~ 36674005 (-) False XLOC_016631
TCONS_00032661 mRNA upstream 112558 36715510 ~ 36739594 (-) True XLOC_016632
TCONS_00032662 mRNA upstream 212532 36815484 ~ 36818132 (-) False XLOC_016634
TCONS_00032643 other downstream 270158 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 274378 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032641 other downstream 277493 36324496 ~ 36324996 (-) True XLOC_016615
TCONS_00032640 other downstream 281268 36320760 ~ 36321221 (-) True XLOC_016614
TCONS_00032639 other downstream 283912 36318102 ~ 36318577 (-) True XLOC_016613
TCONS_00032657 other upstream 61818 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032658 other upstream 67704 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032691 other upstream 802399 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032743 other upstream 1600989 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 2459802 39062754 ~ 39068546 (-) False XLOC_016693