Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00032581 |
| length | 1761 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 11 |
| gene id | XLOC_016554 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 36026183 ~ 36040820 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009058 | biosynthetic process | biological_process |
| GO:0019363 | pyridine nucleotide biosynthetic process | biological_process |
| GO:0009435 | NAD biosynthetic process | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0030659 | cytoplasmic vesicle membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0000309 | nicotinamide-nucleotide adenylyltransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0004515 | nicotinate-nucleotide adenylyltransferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016779 | nucleotidyltransferase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-8201 | Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be located in Golgi membrane; axon; and cytoplasmic vesicle membrane. Predicted to be active in Golgi apparatus. Is expressed in cranial ganglion; neurons; retina; retinal ganglion cell layer; and trigeminal placode. Orthologous to human NMNAT2 (nicotinamide nucleotide adenylyltransferase 2). |
| ensembl_id | ENSDART00000003550 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00032580 | lncRNA | downstream | 292431 | 35728589 ~ 35733752 (-) | True | XLOC_016553 |
| TCONS_00033880 | lncRNA | downstream | 292956 | 35728589 ~ 35733227 (-) | False | XLOC_016553 |
| TCONS_00032579 | lncRNA | downstream | 404316 | 35615395 ~ 35621867 (-) | True | XLOC_016552 |
| TCONS_00033381 | lncRNA | downstream | 410096 | 35615395 ~ 35616087 (-) | False | XLOC_016552 |
| TCONS_00033380 | lncRNA | downstream | 1918198 | 34106830 ~ 34107985 (-) | True | XLOC_016546 |
| TCONS_00033881 | lncRNA | upstream | 35376 | 36076196 ~ 36078638 (-) | True | XLOC_016555 |
| TCONS_00033382 | lncRNA | upstream | 338419 | 36379239 ~ 36425603 (-) | True | XLOC_016619 |
| TCONS_00033882 | lncRNA | upstream | 623950 | 36664770 ~ 36673919 (-) | False | XLOC_016631 |
| TCONS_00032659 | lncRNA | upstream | 630432 | 36671252 ~ 36673918 (-) | False | XLOC_016631 |
| TCONS_00032660 | lncRNA | upstream | 630485 | 36671305 ~ 36673918 (-) | True | XLOC_016631 |
| TCONS_00032577 | mRNA | downstream | 459073 | 35510048 ~ 35567110 (-) | False | XLOC_016551 |
| TCONS_00032576 | mRNA | downstream | 459208 | 35509418 ~ 35566975 (-) | False | XLOC_016551 |
| TCONS_00032575 | mRNA | downstream | 459245 | 35509418 ~ 35566938 (-) | False | XLOC_016551 |
| TCONS_00032574 | mRNA | downstream | 923114 | 34986201 ~ 35103069 (-) | True | XLOC_016550 |
| TCONS_00032573 | mRNA | downstream | 1470238 | 34380982 ~ 34555945 (-) | True | XLOC_016549 |
| TCONS_00032644 | mRNA | upstream | 306110 | 36346930 ~ 36350082 (-) | True | XLOC_016618 |
| TCONS_00032645 | mRNA | upstream | 449285 | 36490105 ~ 36490570 (-) | True | XLOC_016620 |
| TCONS_00032646 | mRNA | upstream | 453029 | 36493849 ~ 36494308 (-) | True | XLOC_016621 |
| TCONS_00032647 | mRNA | upstream | 455816 | 36496636 ~ 36497113 (-) | True | XLOC_016622 |
| TCONS_00032648 | mRNA | upstream | 459066 | 36499886 ~ 36500347 (-) | True | XLOC_016623 |
| TCONS_00032578 | other | downstream | 513307 | 35512071 ~ 35512876 (-) | True | XLOC_016551 |
| TCONS_00032562 | other | downstream | 2456144 | 33569922 ~ 33570039 (-) | True | XLOC_016540 |
| TCONS_00032557 | other | downstream | 2570984 | 33422411 ~ 33455199 (-) | False | XLOC_016538 |
| TCONS_00032550 | other | downstream | 3339775 | 32682201 ~ 32686408 (-) | True | XLOC_016530 |
| TCONS_00032544 | other | downstream | 3358918 | 32667132 ~ 32667265 (-) | True | XLOC_016529 |
| TCONS_00032582 | other | upstream | 146360 | 36187180 ~ 36187673 (-) | True | XLOC_016556 |
| TCONS_00032583 | other | upstream | 148766 | 36189586 ~ 36189919 (-) | True | XLOC_016557 |
| TCONS_00032584 | other | upstream | 149987 | 36190807 ~ 36191279 (-) | True | XLOC_016558 |
| TCONS_00032585 | other | upstream | 152526 | 36193346 ~ 36193896 (-) | True | XLOC_016559 |
| TCONS_00032586 | other | upstream | 154765 | 36195585 ~ 36196119 (-) | True | XLOC_016560 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_14389315_14396492.mRNA | True | 1048 | mRNA | 0.49 | 9 | CI01000004 | 14389035 ~ 14396492 (-) |
