XLOC_016530 (nrbp2a)


Basic Information

Item Value
gene id XLOC_016530
gene name nrbp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32676002 ~ 32738535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032547
GACGGAGATGAAGTGATGCCTCTACGTCTTTCAGTACACTGAGTAGACTATGTGAAGGGTGGACTGCGGACTGGACGTCCAGAGACCCACGTCCCACGTCCCTCACGTACGACACTGTGTCTGCAGCGTTGTTCACTTCACCAAGTATCCTCGAGAATGGGATTAAATTCTCCGTAACGTGAATATTTTATCTAGCTTTAATCGCGAATCGTGTCGTCTGAACTGTTTGTTGCGGTGTCTGTGTGTGGTTGGCGGCTGCGCTGTAACTTGAAATCGTGAGCAGCGTTATTCGCCAGTCTTGGATATTCAATGAAGCACGCTTGCAGATTCAACATCGCTGCAAGCCTCGGGAGGTCCTGCGTGCTCAGTTGGTCTTAAAGGAGCCGTCAAAGCAGCAGGCAAGGGTAAAATGACTATGTCCGTCCCAGAGAACATATCGGGGTCCGGGGGAAAagaggaggagagtgaagatgagAGTGAAATCCTGGAGGAAAGCCCCTGCGGCCGCTGGCAGAAACGACGAGAGCAGGTCAGTCAGGGAAATGTCCCAGGCATCGAGAGTGCGTACTTGGCTATGGACACCGAAGAGGGGGTGGAGGTGGTGTGGAACGAAGTACAGTTTTCAGACAAGAAGGTTTTCAAGTCCTTTGAGGAGCGGATAAGAGAGATGTTTGAGAACCTGATGCAGGTGGAGCATCCCAACATTGTGAAGTTTCACAAGTATTGGCTGGATATGAGGGAAAGCAGAGCGAGGGTGATTTTTATCACAGAATATATGTCATCTGGAAGTCTCAAGCAGTTTCTGAAGAAGACCAAGAAGAACCATAAAACTATGAATGTAAAGGCTTGGAAGCGGTGGTGCACGCAGATACTCTCTGCCCTCAGTTATTTACACTCATGTGATCCTCCCATCATCCATGGGAACCTGACCTGTGACACCATCTTTATCCAGCACAACGGCCTCATAAAGATTGGTTCAGTATTTGCTGAGGCGATTCATGGGAATGTGCATCAGCATCGAGATGAAGTGCGGAACCAGCATTTCTTTGCACCAGAGTATGGCATTGCTGAAGATAACTACGCAATTGATATATTTTCATTCGGTATCTGTGGCTTGGAGATGGCAGTGTTGGAAATCCAGGCCAATGGAGACACTGCTGTTGCGAAAGAGGCCATTGATTATGCTGGACAGTCACTTGAAGACCCTCTAATGAGGGAATTTATTCAGTCATGTGTACGCACAGAAGCCAAATCACGGCCTACCGCTCACGATCTGCTCTTCCACCGGGTGTTATTTGAGGTGCACTCCTTAAAGCTGCTTGCTGCGCACTGCTTTATCAATAACCAGTATCTTCTCCCTGAGAACTGCGTGGAAGAGAAGACAAAATCTTATGACCCCAATGGCATCATGGCAGAGATTAATCATCGCAATCGACCTGGAGTTCATCTAAAataCTCTCACGTCTCTCCTCTGGAGCTGGACAAATTCCTTGAGGATGTGAAGAACGGTATATATCCCCTGATGAACTTTGCTTCCCAGCGGCCACATCCTATCCCCCGCGCTCTTTCTCTGTCACAGGAACAGATGGAGACTGTGAAGACCCCAACGCCAGAGCCACAAGAGACCGAAACCAGAAAGGTTGTCCAGATCCACTGTAATTTGGAAGCAACTGAGGAAGGCACAAGGAGTCATCTCTCTCTGTTTTTAAAGATGGATGACAGGCTTCACCGCCAGCTTAGCTGTGATGTTTTGCCATCTGACAGTCCCAAAGATTTGGCTAGTGAGTTGGTTCACCATGCTTTCATAAGCGAGGAAGACTGTGAGAAGCTGGCATGTTTTCTTGAGGATGCGTTATGTAAGCACTGGTCGGGGACATCCACCTCCCCTACTGCCATGGCTGTGATGTACTAAAGCCCAGCTGGTATAATAATAGACAAACAAAGCTTGAAGTTTGGGTCAGAGATCTAGTCTGACAGGAGGGAAATGTGACCAAAAGCACACCATTATATAATGAAGGTCATGACAAGATGGCTTTAAAGTGAGCAGCGGGCctggaaaaaaaagaagcttGCACCACACCGCATGGTACCTGCACAAACTCCAAAGAGCTGTTAACCTGGATCTTGAAGTTCAAATTTCTGCTGTCATCTCACCATGACAAAGAAATGCATTTTCCAACATTACATTTCCTCTTTCAGTGCCAGCATTTTGGgttgtgaattattattattattattttgttctttcaagaattttaaaaacatccctTCAGGTCGTCATGCTTATGGCTTCATCCAGGCTCATCTAGCAAAGG
>TCONS_00032548
atgcgcgGTGAGCTCAATAGAGAAAGCGAAACTCTTCAtgctttagacggccttgtaaacaactacagggcacagggcagattctgctcttcttggctttgtggctgttcatcaagacgacgacaaaaTCAGGGAAATGTCCCAGGCATCGAGAGTGCGTACTTGGCTATGGACACCGAAGAGGGGGTGGAGGTGGTGTGGAACGAAGTACAGTTTTCAGACAAGAAGGTTTTCAAGTCCTTTGAGGAGCGGATAAGAGAGATGTTTGAGAACCTGATGCAGGTGGAGCATCCCAACATTGTGAAGTTTCACAAGTATTGGCTGGATATGAGGGAAAGCAGAGCGAGGGTGATTTTTATCACAGAATATATGTCATCTGGAAGTCTCAAGCAGTTTCTGAAGAAGACCAAGAAGAACCATAAAACTATGAATGTAAAGGCTTGGAAGCGGTGGTGCACGCAGATACTCTCTGCCCTCAGTTATTTACACTCATGTGATCCTCCCATCATCCATGGGAACCTGACCTGTGACACCATCTTTATCCAGCACAACGGCCTCATAAAGATTGGTTCAGTGTGGCACAGGCTGTTTGTTAACGGTGAGTCCATTTCCAGCTCTATATGCCATGTGCACAGGAATGTGGTTATCTTTGCTGAAGATAACTACGCAATTGATATATTTTCATTCGGTATCTGTGGCTTGGAGATGGCAGTGTTGGAAATCCAGGCCAATGGAGACACTGCTGTTGCGAAAGAGGCCATTGATTATGCTGGACAGTCACTTGAAGACCCTCTAATGAGGGAATTTATTCAGTCATGTGTACGCACAGAAGCCAAATCACGGCCTACCGCTCACGATCTGCTCTTCCACCGGGTGTTATTTGAGGTGCACTCCTTAAAGCTGCTTGCTGCGCACTGCTTTATCAATAACCAGTATCTTCTCCCTGAGAACTGCGTGGAAGAGAAGACAAAATCTTATGACCCCAATGGCATCATGGCAGAGATTAATCATCGCAATCGACCTGGAGTTCATCTAAAataCTCTCACGTCTCTCCTCTGGAGCTGGACAAATTCCTTGAGGATGTGAAGAACGGTATATATCCCCTGATGAACTTTGCTTCCCAGCGGCCACATCCTATCCCCCGCGCTCTTTCTCTGTCACAGGAACAGATGGAGACTGTGAAGACCCCAACGCCAGAGCCACAAGAGACCGAAACCAGAAAGGTTAGAAAAAACCGCAAGAGATCTCTCTCTCTGTTTTTAAAGATGGATGACAGGCTTCACCGCCAGCTTAGCTGTGATGTTTTGCCATGTAAGTCAATGTTCACACATTCAATTATGTTCTTGgtgtttattttttga
>TCONS_00032549
TGAAGATAACTACGCAATTGATATATTTTCATTCGGTATCTGTGGCTTGGAGATGGCAGTGTTGGAAATCCAGGCCAATGGAGACACTGCTGTTGCGAAAGAGGCCATTGATTATGCTGGACAGTCACTTGAAGACCCTCTAATGAGGGAATTTATTCAGTCATGTGTACGCACAGAAGCCAAATCACGGCCTACCGCTCACGATCTGCTCTTCCACCGGGTGTTATTTGAGGTGCACTCCTTAAAGCTGCTTGCTGCGCACTGCTTTATCAATAACCAGTATCTTCTCCCTGAGAACTGCGTGGAAGAGAAGACAAAATCTTATGACCCCAATGGCATCATGGCAGAGATTAATCATCGCAATCGACCTGGAGTTCATCTAAAataCTCTCACGTCTCTCCTCTGGAGCTGGACAAATTCCTTGAGGATGTGAAGAACGGTATATATCCCCTGATGAACTTTGCTTCCCAGCGGCCACATCCTATCCCCCGCGCTCTTTCTCTGTCACAGGAACAGATGGAGACTGTGAAGACCCCAACGCCAGAGCCACAAGAGACCGAAACCAGAAAGGTTGTCCAGATCCACTGTAATTTGGAAGCAACTGAGGAAGGCACAAGGAGTCATGTAAGTCTCATTTGTAGTTTAGCTGAAAGGGCACcttttttaccccttttacaagatgtaagataagataATTCATAATAGCCTAAAGAATCTGCCTATTTTGTCTGAGTAGAGTGTAGCTTtattttgtagcctgtggctttaaatgcaaattagctgcttctccctgcccaccattcccatgtgcatgtctgcttctcctgcattacatcagataaacagcagtcagtgatagagacagactcgattaaagctgaaatacagctcattagtcaaaaataccaagtacgtttttcatgtatttgtggtggaagTTAATCAAGCCTTTTtaaaatgatgagtcacacacaaatgcagtttgCCATACACGCACATATattagcatttactgacaccatgtggtCGTGGTGATTATAGCTGTTAAGAATTACatgttaattttactttttttaccacaaacatgctctgttttaaaaatggtttaaaattatAGAACTTATAAAAACCACAGAGAGTTGTGATATTTTAATCTCACTTTATTTGCAAtgaaatgttctgtggacatgtgtttaCATGTTATTACAGAAACATGGCGTCTTGTAAATCACTTCGGTAGGCGGGGAAAACCCcactcctacgtcatgttgcAGTGGGCCTCGAAATCACTAGGATTTGTGTCCTATTTgaacatcaggaaa
>TCONS_00032550
TTTCTGAAGAAGACCAAGAAGAACCATAAAACTATGAATGTAAAGGCTTGGAAGCGGTGGTGCACGCAGATACTCTCTGCCCTCAGTTATTTACACTCATGTGATCCTCCCATCATCCATGGGAACCTGACCTGTGACACCATCTTTATCCAGCACAACGGCCTCATAAAGATTGGTTCAGTGTGGCACAGGCTGTTTGTTAACGTATTTGCTGAGGCGATTCATGGGAATGTGCATCAGCATCGAGATGAAGTGCGGAACCAGCATTTCTTTGCACCAGAGTATGGCATTGCTGAAGATAACTACGCAATTGATATATTTTCATTCGGTATCTGTGGCTTGGAGATGGCAGTGTTGGAAATCCAGGCCAATGGAGACACTGCTGTTGCGAAAGAGGCCATTGATTATGCTGGACAGTCACTTGAAGACCCTCTAATGAGGGTAAAACACTTAAAGCACGTTTATAATTAATACTCTGCTGAATTATTTAATCTAACACTCTTGTCTCTTTACACTGACAGGAATTTATTCAGTCATGTGTACGCACA

Function

symbol description
nrbp2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular signal transduction; and protein phosphorylation. Predicted to be active in cytoplasm and endomembrane system. Orthologous to human NRBP2 (nuclear receptor binding protein 2).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0012505 endomembrane system cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070713-4 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular signal transduction; and protein phosphorylation. Predicted to be active in cytoplasm and endomembrane system. Orthologous to human NRBP2 (nuclear receptor binding protein 2).

Ensembl:

ensembl_id ENSDARG00000032951

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032547 False 2315 mRNA 0.47 17 32676002 32738535
TCONS_00032548 False 1362 mRNA 0.46 14 32678621 32688905
TCONS_00032549 False 1323 lncRNA 0.42 7 32679222 32682562
TCONS_00032550 True 548 processed_transcript 0.43 7 32682201 32686408

Neighbor

gene id symbol gene type direction distance location
XLOC_016527 puf60a coding downstream 4148 32650729 ~ 32671854 (-)
XLOC_016529 BX323559.2 coding downstream 8737 32667132 ~ 32667265 (-)
XLOC_016528 BX323559.1 coding downstream 9543 32666324 ~ 32666459 (-)
XLOC_016526 NA coding downstream 25379 32646733 ~ 32650623 (-)
XLOC_016525 si:dkeyp-73d8.9 coding downstream 32264 32642338 ~ 32643738 (-)
XLOC_016531 bfsp2 coding upstream 22595 32761130 ~ 32769759 (-)
XLOC_016532 NA coding upstream 44906 32783441 ~ 32786532 (-)
XLOC_016533 NA coding upstream 63230 32801765 ~ 32803728 (-)
XLOC_016534 prpf4ba coding upstream 73867 32812402 ~ 32826108 (-)
XLOC_016535 NA coding upstream 298838 33037373 ~ 33042159 (-)
XLOC_016522 NA non-coding downstream 62924 32610636 ~ 32613078 (-)
XLOC_016513 BX663499.2 non-coding downstream 382486 32293401 ~ 32293516 (-)
XLOC_016536 NA non-coding upstream 481497 33220032 ~ 33224916 (-)
XLOC_016537 NA non-coding upstream 533306 33271841 ~ 33281735 (-)

Expression


Co-expression Network