XLOC_016534 (prpf4ba)


Basic Information

Item Value
gene id XLOC_016534
gene name prpf4ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32812402 ~ 32826108 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032553
AGATTTCAATATTCAATTCGCGTATAGGTACAGTACAGTAACAAATACTGAGAAGAAAGTGCGACAACATTTCAAACAATTATTTGGACGCCAgtttcacaatttattttaagcaaatttaagTATCACCCCCAGACTGAATTTTGAATCGACTCTTCGTCAAGCGACTCGGCACACCAGGAAAAATCAAGATGGCGAACATGGACGCGTTAGCCAAAACAATAGCGAAGGATTATGTAGATGATATGGAGAGCTCCGACAGTGTGGATGAAAATGAATGTGTACCTGGTGAAGATGGAGCTAAAAAAGCAGATAACATGGACTTTGCCAGGGTGGAAAAACAcaagaaaagaaaacacaaacatcGAAGCAAGCACAAAAAGCATAAACATTCCTCACCAGATGAGAGAGACCAAaagcacaaatacaaacacaaacataagCGGAAACACAGAGACTCTTTCCGCGATGATAGAGAATGTTCTACTAGCTATGAAGGTGCAGCCGACTCACCAAAGCGATTCAGACTTGATGACCTTGCTGCTCTGGAGGATCTGGAGAAACAGAGGGCCATGATTCAGGCAGAGCTTGATAATGAGCTGATGGAAGGGTCTGTGCAGTCAGGTATGGGGCTGATATTACAGGGTTATAACTCTGATTCAGAGGACGGGGAGGTCCAGGAGGCTGTTCGAAATGGTGAGCAACAGAGAAAAGATCTCGATGAGCTTGTAACGGTTAAGGGGAATGGCAGAAAATTGCAACAGGATTATGTAAACGATGAACAATTTTATTCTGTGCTTGAAGGCAGAACCATGTCTGAGGAGGTGACAGTCCAGAGccataaatctgaaaaaagagaGAGTATGACTGGGTTAGGTATTAAAATCAGCGAGAGACCTAGTGGTCCCAGTGAAACGAAGGAAAGGAGACGATCAAGGAGCACTGACAGATCCAAAGATAGAAGTCGTAGGTCCAAATCTCCTGTGAAATCTAAAGAAGTGCCATCGTCATCAGCCACAAGCAACAGAAAATCAAATACACGGCCTGAAGAGCAAGCTGTAGACCACAGATCCTCATCAAGAAGCAGCAAATCTGGTTCTAAAGAAAGAAGCACCAGCTTGCCAGAAGTTGACAGAGACAAGAAACCAGTAAAGGCCCCCTTAAAAGAAGTCTCTTCTGGGAAAGAGAATCGATCTCCTAGCAGAAAACAAGGTCCAGATCGACTTAGCCCAACTGTGCAGCCCAGGAGCCACCGCTCACCTGAACGCCTACCTGTTGTTCAGAACACAGACAGGGCATCCAGACAGGACAGATCTACGTGCCACAATAGATCCCCTCCGAGGAGAGGCAGATCTCGGTCAGTTGAGAGGAGACGGAGAGAAGAAGAGCGCCAGAGACTCTCTAGTGACAGGATGCGATCTCGTGATATGGCAGGAGCCCATAGAGAAGACAGTCCTTCTATAAGCTCTAGACGAAGGTTGAACCACTCGCCTCTCAGACGAAGGTCCCGTTCTCCCAGGAGGCGGAGCAGCAGGTCTCCTCTCAGACACAGGGAACGTGACAGGATGGATCGCAGGCAGCCGGTGCGTTCGAGATCGCAGGAGAGGCGGAGAAGAAGGAGCAAGGAAAGAGAGGACATGTTTAAAGGCAGTCTGTCTGAAGGAATGAAGGCTGAGCAGGAGGACTCGGATGAGGAAGTGCTGGAGGATTATGACGTAGATGAAGAGGACGAGGAGGCTTTGATAGAGCAGAGGAGACTTCAGCGCTTGGCCATAATGCAGAAATATAAGCCAGTGAATGAGGACAGCAATATGTCAGGACTCTCAGATCACGGCAGTCCTCAGAGTAGCACTCACAGCCGGTCCCCATCCCCTGATGACATTCTTGAGCGTGTGGCTGCTGATGTCAAAGCCTATGAGCAAGAGAACCTGGACACATTTGAGGATAATGTGAAGGCCAAGTATAGTCTCGTCTCCCAAGAAAAAAATGGTGCTAATTCAAAAAAGCCTCCAGCCCCTGATATGTTCACAGAGTCAGATGACATGTTTGCTGCATACTTTGATAGTGCCAGGTTACGGGCCGCAGGCATCGGGAAGGACTTTAAGGAAAACCCGAGTCTCAGAGATAACTGGACAGATGCTGAGGGATATTACCGTGTGAACATTGGTGAGGTGTTGGACAAACGGTACGCGGTGTACGGCTACACTGGACAGGGCGTCTTCAGTAACGTGATCCGAGCAAGAGACTTGGCTCGAGCCAATCAGGAAGTGGCAGTGAAAATAATACGCAACAATGAGATGATGCAAAAGACAGGCCTCAAGGAGTTGGAGTTTCTGAAGAAACTGAACGACGCTGATGCTGATGATAAATTCCACTGCTTGCGCCTTTTTAGACACTTTTATCATAAGCAGCATTTGTGTCTGGTATTCGAACCACTCAGCATGAACCTGCGGGAGGTGTTGAGGAAGTATGGCAAGGACGTTGGGCTACACATCAAGGCTGTGCGCTCATACAGCCAACAGCTATTCCTGGCACTCAAACACCTCAAGCGATGCAACATCCTGCATGCTGACATCAAACCTGACAACATTCTGGTCAACGAACCCAAAACCATCCTCAAGCTGTGTGACTTTGGTTCAGCGTCACATGTGGCAGACAATGACATAACTCCATACCTGGTCAGCCGCTTCTACAGGGCACCTGAGATCATCATTGGAAAGTCATATGATTACGGAATCGATATGTGGTCTGTGGGCTGCACTCTCTATGAACTATACACAGGAAAAATCCTTTTCCCCGGCAAGACCAATAATCACATGCTGAAGCTCAACATGGACCTCAAAGGAAAATTGCCTAATAAGATGATCAGGAAGGGTCTGTTCAAGGACCAGCACTTTGACCAAAACTTGAACTTTTTGTACACTGAGGTTGATAAAGTCACTGAAAGGGAAAAGATCACAGTCATGAGCACCATTAACCCAACTAAGGACCTGTCGATGGACATGGTGGGTCGCCAGGCTTTACCAGAGGACCAGCGAAAGAAGGTTGGTCAGCTGAAAGATCTGTTGGACCAGATCCTGATGCTGGACCCAGCCAAACGGATCACCATCAACCAGGCTTTACAGCATCCTTTCATCCAAGAGAGAATATGAC
>TCONS_00032554
ATGGCGAACATGGACGCGTTAGCCAAAACAATAGCGAAGGATTATGTAGATGATATGGAGAGCTCCGACAGTGTGGATGAAAATGAATGTGTACCTGGTGAAGATGGAGCTAAAAAAGCAGATAACATGGACTTTGCCAGGGTGGAAAAACAcaagaaaagaaaacacaaacatcGAAGCAAGCACAAAAAGCATAAACATTCCTCACCAGATGAGAGAGACCAAaagcacaaatacaaacacaaacataagCGGAAACACAGAGACTCTTTCCGCGATGATAGAGAATGTTCTACTAGCTATGAAGGTGCAGCCGACTCACCAAAGCGATTCAGACTTGATGACCTTGCTGCTCTGGAGGATCTGGAGAAACAGAGGGCCATGATTCAGGCAGAGCTTGATAATGAGCTGATGGAAGGGTCTGTGCAGTCAGGTATGGGGCTGATATTACAGGGTTATAACTCTGATTCAGAGGACGGGGAGGTCCAGGAGGCTGTTCGAAATGGTGAGCAACAGAGAAAAGATCTCGATGAGCTTGTAACGGTTAAGGGGAATGGCAGAAAATTGCAACAGGATTATGTAAACGATGAACAATTTTATTCTGTGCTTGAAGGCAGAACCATGTCTGAGGAGGTGACAGTCCAGAGccataaatctgaaaaaagagaGAGTATGACTGGGTTAGGTATTAAAATCAGCGAGAGACCTAGTGGTCCCAGTGAAACGAAGGAAAGGAGACGATCAAGGAGCACTGACAGATCCAAAGATAGAAGTCGTAGGTCCAAATCTCCTGTGAAATCTAAAGAAGTGCCATCGTCATCAGCCACAAGCAACAGAAAATCAAATACACGGCCTGAAGAGCAAGCTGTAGACCACAGATCCTCATCAAGAAGCAGCAAATCTGGTTCTAAAGAAAGAAGCACCAGCTTGCCAGAAGTTGACAGAGACAAGAAACCAGTAAAGGCCCCCTTAAAAGAAGTCTCTTCTGGGAAAGAGAATCGATCTCCTAGCAGAAAACAAGGTCCAGATCGACTTAGCCCAACTGTGCAGCCCAGGAGCCACCGCTCACCTGAACGCCTACCTGTTGTTCAGAACACAGACAGGGCATCCAGACAGGACAGATCTACGTGCCACAATAGATCCCCTCCGAGGAGAGGCAGATCTCGGTCAGTTGAGAGGAGACGGAGAGAAGAAGAGCGCCAGAGACTCTCTAGTGACAGGATGCGATCTCGTGATATGGCAGGAGCCCATAGAGAAGACAGTCCTTCTATAAGCTCTAGACGAAGGTTGAACCACTCGCCTCTCAGACGAAGGTCCCGTTCTCCCAGGAGGCGGAGCAGCAGGTCTCCTCTCAGACACAGGGAACGTGACAGGATGGATCGCAGGCAGCCGGTGCGTTCGAGATCGCAGGAGAGGCGGAGAAGAAGGAGCAAGGAAAGAGAGGACATGTTTAAAGGCAGTCTGTCTGAAGGAATGAAGGCTGAGCAGGAGGACTCGGATGAGGAAGTGCTGGAGGATTATGACGTAGATGAAGAGGACGAGGAGGCTTTGATAGAGCAGAGGAGACTTCAGCGCTTGGCCATAATGCAGAAATATAAGCCAGTGAATGAGGACAGCAATATGTCAGGACTCTCAGATCACGGCAGTCCTCAGAGTAGCACTCACAGCCGGTCCCCATCCCCTGATGACATTCTTGAGCGTGTGGCTGCTGATGTCAAAGCCTATGAGCAAGAGAACCTGGACACATTTGAGGATAATGTGAAGGCCAAGTATAGTCTCGTCTCCCAAGAAAAAAATGGTGCTAATTCAAAAAAGCCTCCAGCCCCTGATATGTTCACAGAGTCAGATGACATGTTTGCTGCATACTTTGATAGTGCCAGGTTACGGGCCGCAGGCATCGGGAAGGACTTTAAGGAAAACCCGAGTCTCAGAGATAACTGGACAGATGCTGAGGGATATTACCGTGTGAACATTGGTGAGGTGTTGGACAAACGGTACGCGGTGTACGGCTACACTGGACAGGGCGTCTTCAGTAACGTGATCCGAGCAAGAGACTTGGCTCGAGCCAATCAGGAAGTGGCAGTGAAAATAATACGCAACAATGAGATGATGCAAAAGACAGGCCTCAAGGAGTTGGAGTTTCTGAAGAAACTGAACGACGCTGATGCTGATGATAAATTCCACTGCTTGCGCCTTTTTAGACACTTTTATCATAAGCAGCATTTGTGTCTGGTATTCGAACCACTCAGCATGAACCTGCGGGAGGTGTTGAGGAAGTATGGCAAGGACGTTGGGCTACACATCAAGGCTGTGCGCTCATACAGCCAACAGCTATTCCTGGCACTCAAACACCTCAAGCGATGCAACATCCTGCATGCTGACATCAAACCTGACAACATTCTGGTCAACGAACCCAAAACCATCCTCAAGCTGTGTGACTTTGGTTCAGCGTCACATGTGGCAGACAATGACATAACTCCATACCTGGTCAGCCGCTTCTACAGGGCACCTGAGATCATCATTGGAAAGTCATATGATTACGGAATCGATATGTGGTCTGTGGGCTGCACTCTCTATGAACTATACACAGGAAAAATCCTTTTCCCCGGCAAGACCAATAATCACATGCTGAAGCTCAACATGGACCTCAAAGGAAAATTGCCTAATAAGGAAAAGATCACAGTCATGAGCACCATTAACCCAACTAAGGACCTGTCGATGGACATGGTGGGTCGCCAGGCTTTACCAGAGGACCAGCGAAAGAAGGTTGGTCAGCTGAAAGATCTGTTGGACCAGATCCTGATGCTGGACCCAGCCAAACGGATCACCATCAACCAGGCTTTACAGCATCCTTTCATCCAAGAGAGAATATGA

Function

symbol description
prpf4ba Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within mRNA cis splicing, via spliceosome and phosphorylation. Predicted to be active in nucleus. Orthologous to human PRPF4B (pre-mRNA processing factor 4B).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-947 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within mRNA cis splicing, via spliceosome and phosphorylation. Predicted to be active in nucleus. Orthologous to human PRPF4B (pre-mRNA processing factor 4B).

Ensembl:

ensembl_id ENSDARG00000008784

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032553 False 3153 mRNA 0.47 15 32812402 32826108
TCONS_00032554 True 2874 mRNA 0.48 14 32812403 32825917

Neighbor

gene id symbol gene type direction distance location
XLOC_016533 NA coding downstream 8674 32801765 ~ 32803728 (-)
XLOC_016532 NA coding downstream 25870 32783441 ~ 32786532 (-)
XLOC_016531 bfsp2 coding downstream 42643 32761130 ~ 32769759 (-)
XLOC_016530 nrbp2a coding downstream 73867 32676002 ~ 32738535 (-)
XLOC_016529 BX323559.2 coding downstream 145137 32667132 ~ 32667265 (-)
XLOC_016535 NA coding upstream 211265 33037373 ~ 33042159 (-)
XLOC_016536 NA coding upstream 393924 33220032 ~ 33224916 (-)
XLOC_016537 NA coding upstream 445733 33271841 ~ 33281735 (-)
XLOC_016538 ccdc24 coding upstream 596303 33422411 ~ 33455274 (-)
XLOC_016539 b4galt2 coding upstream 650658 33476766 ~ 33676494 (-)
XLOC_016528 BX323559.1 non-coding downstream 145943 32666324 ~ 32666459 (-)
XLOC_016526 NA non-coding downstream 161779 32646733 ~ 32650623 (-)
XLOC_016540 BX548164.1 non-coding upstream 743814 33569922 ~ 33570039 (-)
XLOC_016542 NA non-coding upstream 956551 33782659 ~ 33785190 (-)

Expression


Co-expression Network