XLOC_016539 (b4galt2)


Basic Information

Item Value
gene id XLOC_016539
gene name b4galt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33476766 ~ 33676494 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032560
GTGATATTTGTAAATTGCAGTCCAGGAGGGTTCAGCGGTGCGGGGAGGTGACGTTGACCGGATGCGTGTAGCGGAGCGTGCCGTGTGGCTTTGACCATGAGCCGGCTGATGTTGGGCCGGACCCTGGAGCGGATTTGCAAGGCTGTGCTGTTGCTCTGCCTGGTGCACTTCCTCATCATGATGATCCTCTACTTCGATGTCTACAGCCAGCGTTTCGACATCTTCAGCCGCTTCAACAATGGCCGTGGAGCAAATAACTCTCGAGGAGCCCACCACTATTACTACAATTTCTCCAGCGGAAGGCCCAACACTACCTTTGCGAGCTACTTGGCCACAGCTGACCATCTTCTGCCTAGCACCAAGCCAGAGGCAAACCACACACCGCCAACCCCAAAACCATTACCACCATGTCCAGAGGTCCCTCTTGGTCTTGTGGGCCGTCTCCTCATCGAGTTCAGCTCCCAGATAACCCTGGAGCGGGTGCAGAGGGAGAACCCGAATGTCACAGAAGGCGGGAAATATACTCCTCCGGACTGCCGGCCAAAACAAAAGGTGGCCATCATCATCCCTTTCAGGCACAGAGACAACCATCTGAAATACTGGCTTCACTATTTGCATCCAGTCCTGCGCAGACAGAAGATCGACTATGGGATCTATATCATCAACCAgCTGGGTGAGGACACCTTTAATCGGGCCAAGCTGCTGAATGTTGGCTACACAGAGGCTATTAAAGACGCAGAATACAACTGCTTCATTTTCAGTGACGTGGACCTGATCCCTATGGATGACAGAAACCTCTACCACTGTTACGACCAGCCCCGTCACTTTGCCATTGCCATGGACAAATTTGGCTTCAGATTGCCCTATGCAGGTTATTTTGGAGGGGTGTCCGGCCTTAGCAAAAAACAATTCCTCAAAATCAATGGCTTCCCTAATGAGTACTGGGGATGGGGAGGTGAAGATGATGACATTTACAACAGAATCACACTCAATGGGATGAAAGTGTCTCGGCCCGACGTGAGAATCGGCCGCTACAGGATGATCAAGCATGAGAGAGACAAGCACAATGAGCCAAACCCCCAGAGGTTCAGTAAGATCCAGAACACCAAGAACACCATGAGAAAAGATGGCATCAGCTCGCTCATGTATAGAGTGGTCTCCATAAAGAAGTACCCGCTCTACACCAACATTTCAGTAGAGATCGGCAAGCCTCCTCCAAGACCCCTCAAAGGATAGAGAGTCTAAACCCGGGACATCATCATGACCTTCCTAAAGCTCAGCACACGAACACACACgtactgtacacacacaaactctgCCCAGGGTCACTCTGATGCAGCAGTGATATGCTGAACAGGTTAGTTCTCAGGAATACATGGAAGCTTAGTGAGGATCCATGGATGTAGATTTATATCCTGATCCAGATGGAGATGTGCACATGGAGTCTGGACAAGACAGGAGCATCATTTTCATACTCCCGATGGCTGGCTCGTTCAGACCTTGAGGGTCAATAGGCGTTTTAGGCTGGAGCAGAAGGATTGTTCACTTCTGTTTTTTG
>TCONS_00032561
GAAAACCTGCCTCCCGATGCCTTTATTCGCACACCCATCATCTCTCCTCGCCAAAAAAAACACAGCACGGACAGATGAAAATACACGGCAAAAAATTCAGTCTCATCACTGGAGTGTACGCTTTTGCCAAAGCCTCTGAACAACATGGAGATATATAGCATTCCTGCAATATGGCATAATCCTTTCATCAGTGAGCGTTTCTTTGCGAAAAATGAATTAATCGCCGTTGTCGGCAGAAAAAAATAACGCTATCCGGCAAGTAACTCCTTCTTTTTACATGGATATTAGGAGAAAAATACATGCACTGCACACAGATGACACATTTCCAGCTGAAACTGACAGTTCTTCAGAAAAACACAGTCAGCTGAAGTGAATACAACAAAGATGAATCCCTTTTAGAGGAGCTCTCCGGCTTGCAGAGGATCAAGGTGATATTTGTAAATTGCAGTCCAGGAGGGTTCAGCGGTGCGGGGAGGTGACGTTGACCGGATGCGTGTAGCGGAGCGTGCCGTGTGGCTTTGACCATGAGCCGGCTGATGTTGGGCCGGACCCTGGAGCGGATTTGCAAGGCTGTGCTGTTGCTCTGCCTGGTGCACTTCCTCATCATGATGATCCTCTACTTCGATGTCTACAGCCAGCGTTTCGACATCTTCAGCCGCTTCAACAATGGCCGTGGAGCAAATAACTCTCGAGGAGCCCACCACTATTACTACAATTTCTCCAGCGGAAGGCCCAACACTACCTTTGCGAGCTACTTGGCCACAGCTGACCATCTTCTGCCTAGCACCAAGCCAGAGGCAAACCACACACCGCCAACCCCAAAACCATTACCACCATGTCCAGAGGTCCCTCTTGGTCTTGTGGGCCGTCTCCTCATCGAGTTCAGCTCCCAGATAACCCTGGAGCGGGTGCAGAGGGAGAACCCGAATGTCACAGAAGGCGGGAAATATACTCCTCCGGACTGCCGGCCAAAACAAAAGGTGGCCATCATCATCCCTTTCAGGCACAGAGACAACCATCTGAAATACTGGCTTCACTATTTGCATCCAGTCCTGCGCAGACAGAAGATCGACTATGGGATCTATATCATCAACCAgCTGGGTGAGGACACCTTTAATCGGGCCAAGCTGCTGAATGTTGGCTACACAGAGGCTATTAAAGACGCAGAATACAACTGCTTCATTTTCAGTGACGTGGACCTGATCCCTATGGATGACAGAAACCTCTACCACTGTTACGACCAGCCCCGTCACTTTGCCATTGCCATGGACAAATTTGGCTTCAGATTGCCCTATGCAGGTTATTTTGGAGGGGTGTCCGGCCTTAGCAAAAAACAATTCCTCAAAATCAATGGCTTCCCTAATGAGTACTGGGGATGGGGAGGTGAAGATGATGACATTTACAACAGAATCACACTCAATGGGATGAAAGTGTCTCGGCCCGACGTGAGAATCGGCCGCTACAGGATGATCAAGCATGAGAGAGACAAGCACAATGAGCCAAACCCCCAGAGGTTCAGTAAGATCCAGAACACCAAGAACACCATGAGAAAAGATGGCATCAGCTCGCTCATGTATAGAGTGGTCTCCATAAAGAAGTACCCGCTCTACACCAACATTTCAGTAGAGATCGGCAAGCCTCCTCCAAGACCCCTCAAAGGATAG

Function

symbol description
b4galt2 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT2 (beta-1,4-galactosyltransferase 2).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko00515 Mannose type O-glycan biosynthesis
ko00514 Other types of O-glycan biosynthesis
ko00533 Glycosaminoglycan biosynthesis - keratan sulfate
ko00601 Glycosphingolipid biosynthesis - lacto and neolacto series
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-070912-258 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT2 (beta-1,4-galactosyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000077994

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032560 False 1558 mRNA 0.50 6 33476766 33645411
TCONS_00032561 True 1664 mRNA 0.49 7 33477088 33676494

Neighbor

gene id symbol gene type direction distance location
XLOC_016538 ccdc24 coding downstream 21492 33422411 ~ 33455274 (-)
XLOC_016537 NA coding downstream 195031 33271841 ~ 33281735 (-)
XLOC_016536 NA coding downstream 251850 33220032 ~ 33224916 (-)
XLOC_016535 NA coding downstream 434607 33037373 ~ 33042159 (-)
XLOC_016534 prpf4ba coding downstream 650658 32812402 ~ 32826108 (-)
XLOC_016541 atp6v0b coding upstream 4705 33681199 ~ 33687214 (-)
XLOC_016542 NA coding upstream 106165 33782659 ~ 33785190 (-)
XLOC_016543 NA coding upstream 166908 33843402 ~ 33926779 (-)
XLOC_016544 ptch2 coding upstream 292718 33969212 ~ 33993636 (-)
XLOC_016545 eif2b3 coding upstream 332304 34008798 ~ 34072218 (-)
XLOC_016533 NA non-coding downstream 673038 32801765 ~ 32803728 (-)
XLOC_016532 NA non-coding downstream 690234 32783441 ~ 32786532 (-)
XLOC_016546 NA non-coding upstream 430336 34106830 ~ 34107985 (-)
XLOC_016552 NA non-coding upstream 1938901 35615395 ~ 35621867 (-)
XLOC_016553 NA non-coding upstream 2052095 35728589 ~ 35733752 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12823734_12925962 B4GALT2 coding CI01000004 null 12823734 ~ 12925962 (-)