XLOC_016537


Basic Information

Item Value
gene id XLOC_016537
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33271841 ~ 33281735 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032556
CTGCCCCACAGGTAAGCGGATGAGGTCTGCAAGCAGAGTGGTACCGTCCTGCAGAGCGGCCGGAGGCCTGAAGGCGGGCCTGGGAAAGGAGCTGCATGCTGAGGCTCATGAGGAGCTCTCCGCCTCTCACGGCAGGGCCTCTGTCAGTCAGCACGGGCCCCCTGCAGCCCACAGACCTGCCGGGACACAGCACACACAACACACAGGTGTCTGAGGGTGCTTGTTTTAGGCAGAGGTGAGAGCTTCAGCCTGAGCGACATGAGGAAAGAGTTGGACAGACCACGTCATCACCTGCCCAGGGTCACATCTACACTCGTATCTCCATCTATGACTGCTGATCCAACAAGGGCACAACGTGTACTTCCTCCACCCAGATTTCTGCATCTTAGTCATACCATCATTTGGTTATGCAATTTCATGGGGAGCATTAGGGAAACTGTTTTAGCCCAGGAGCCGTAATATTCTGGATGCTGCTTTGGGCAACAGGCACAGAGAGCATTTCCTCTATCAACACTTTAACACCACACATGCTTCCGCCGTGATGATTCACATCACTCTAGAGGGAAATTCAGGAAACTATTATAAAAATGCTGCTGAATTTTTGCTGTTCTGTACTTTGCATCAAACTGGTCTCATTTAGAAATTAATCAAAGCGGTGATGACTGGTGTGCAAGcaaattatatttcaaaatgttgcaaaaattcTGATTTGTTGCTGTATTATGATCAATTATTACTGGTGttcaatcattattattattattaatattatattttgatgtgatatttatattttgttttcgtATCTTCATGTTTTTGTGGCTATCGTAATACATTTAACCTTTTCAAGGCTTTTTTTGATGAATGGAAgtatcaaaacattttattttaaatagaacCTTTAGTAACATTATAAATGCTGTCACTTTTGACCAATTGAATGTATAAAAGTTGTATGGTACTTTTGAATGTTAAGATATCATGTTTTCCATATATAGCAGCATAACAATTTTTAAGATTGATCATAATCAGGAATGATTCTTTGGTGTTTCAGACAATTATCACATTATAAATTTCAGAAACTTATGTGAAACTGAAATCTACAGAAATAATGATACAAGTTCAACTTTGAatcacacaagtaaatacattaaGCAGGCTCATGCAAATGCtcacattatatttaaatatgcaaattttcattattaaaaaaaaaaaaaaagttacattattGGTAATCGGACACTGCATCCATTATAATTGACAGGGCATGTCAGgcatgtgttttgttgttgttgcttccAGAGCATTTTACAAAAATTAAAGCATGCTGTCCATGATGTTGGTCTTTTGTCAGCCATTAAAATGGCAGTAAGACGCCTTttgtaattaaaacaaacaaac

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0021546 rhombomere development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0014904 myotube cell development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032556 True 1404 lncRNA 0.39 2 33271841 33281735

Neighbor

gene id symbol gene type direction distance location
XLOC_016536 NA coding downstream 46925 33220032 ~ 33224916 (-)
XLOC_016535 NA coding downstream 229682 33037373 ~ 33042159 (-)
XLOC_016534 prpf4ba coding downstream 445733 32812402 ~ 32826108 (-)
XLOC_016533 NA coding downstream 468113 32801765 ~ 32803728 (-)
XLOC_016532 NA coding downstream 485309 32783441 ~ 32786532 (-)
XLOC_016538 ccdc24 coding upstream 140676 33422411 ~ 33455274 (-)
XLOC_016539 b4galt2 coding upstream 195031 33476766 ~ 33676494 (-)
XLOC_016540 BX548164.1 coding upstream 288187 33569922 ~ 33570039 (-)
XLOC_016541 atp6v0b coding upstream 399464 33681199 ~ 33687214 (-)
XLOC_016542 NA coding upstream 500924 33782659 ~ 33785190 (-)
XLOC_016529 BX323559.2 non-coding downstream 604576 32667132 ~ 32667265 (-)
XLOC_016543 NA non-coding upstream 561667 33843402 ~ 33926779 (-)
XLOC_016546 NA non-coding upstream 825095 34106830 ~ 34107985 (-)
XLOC_016552 NA non-coding upstream 2333660 35615395 ~ 35621867 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_12696326_12707951 NA coding CI01000004 null 12694377 ~ 12707996 (+)