CI01000004_12823734_12925962 (B4GALT2)


Basic Information

Item Value
gene id CI01000004_12823734_12925962
gene name B4GALT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12823734 ~ 12925962 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12823734_12925962.mRNA
ATGAGCCGGCTGATGTTGGGCCGGACCCTGGAGCGGATCTGCAAGGCTGTGCTGTTGCTCTGCCTGGTGCACTTCCTCATTATGATGATCCTCTACTTTGATGTCTACAGCCAGCGTTTTGACATCTTTAGCCGCTTCAACAATGGCCGTGGAGCGAACAGCTCACGAGGACCCCACCACTACTTCTATAACTTTTCCAGTGGCAGGCCCAACACTACCTTTGCAAGCTACTTGGCCACAGCTGACCATCTTCTGCCCAGCACCAAGCCAGAGGCAAACCATACTCCACCAACCCCTAAACCATTACCACCATGTCCAGAGGTTCCTCCTGGTCTGGTGGGGCGTCTCCTCATCGAATTCAGCTCACAGATAACCCTCGAGCGGGTGCAAAGAGAGAACCCTAATGTGACAGAAGGGGGAAAATACACTCCTTCGGATTGCCGGCCGAAACAAAAGGTGGCCATCATCATCCCATTCAGGCACAGAGACAACCATCTGAAATACTGGCTTCACTACCTGCACCCAGTCCTGCGCAGACAGAAGATCGACTATGGGATCTATATCATCAACCAGCTTGGTGAGGACACCTTTAATCGGGCCAAGCTGCTTAATGTTGGCTACACAGAAGCTCTGAAAGATGCAGAATACGACTGCTTCATTTTCAGTGATGTGGACCTGATCCCTATGGACGACCGGAACCTCTACCACTGTTACGACCAGCCCCGTCACTTTGCCATTGCCATGGACAAATTCGGCTTCAGGCTGCCCTATGCAGGGTATTTTGGAGGAGTGTCCGGCCTTAGCAAAAAACAGTTCCTCAAAATCAATGGCTTCCCAAATGAGTACTGGGGTTGGGGAGGTGAAGATGATGACATTTACAACAGAATCACACTAAATGGGATGAAAGTGTCTCGGCCTGATGTGAGAATCGGCCGCTACAGGATGATCAAGCATGAGAGAGACAAGCACAATGAGCCAAACCCCCAGAGGTTCAGTAAGATCCAGAACACCAAGAACACTATGAGGAAAGATGGGATCAGCTCGCTGATGTACAGAGTGGTGTCTGTGAAGAAGTATCCGCTCTATACCAACATTTCCGTAGAGATCGGCAAGCCTCCTCCAAGACCTTTCAAAGGA

Function

symbol description
b4galt2 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT2 (beta-1,4-galactosyltransferase 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07967 B4GALT2; beta-1,4-galactosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12823734_12925962.mRNA True 1137 mRNA 0.51 6 12823734 12925962

Neighbor

gene id symbol gene type direction distance location
CI01000004_12781663_12809789 NA coding downstream 13945 12781525 ~ 12809789 (-)
CI01000004_12748162_12752913 NA coding downstream 70459 12747939 ~ 12753275 (-)
CI01000004_12574165_12577698 NA coding downstream 243555 12574085 ~ 12580179 (-)
CI01000004_12550061_12550882 NA coding downstream 272803 12549886 ~ 12550931 (-)
CI01000004_12404227_12411145 PRPF4BA coding downstream 412069 12403532 ~ 12411665 (-)
CI01000004_12952019_12956814 ATP6V0B coding upstream 25797 12951759 ~ 12956814 (-)
CI01000004_13086552_13088659 NA coding upstream 158862 13084824 ~ 13088898 (-)
CI01000004_13089864_13091636 NA coding upstream 162621 13088583 ~ 13091669 (-)
CI01000004_13094468_13114401 PTCH2 coding upstream 167624 13093586 ~ 13114998 (-)
CI01000004_13127356_13168751 EI2BG, EIF2B3 coding upstream 201394 13127356 ~ 13168751 (-)
G32701 NA non-coding downstream 42244 12775782 ~ 12781490 (-)
G32707 NA non-coding downstream 110558 12707058 ~ 12713176 (-)
G32606 NA non-coding downstream 167907 12600800 ~ 12655827 (-)
G32647 NA non-coding downstream 229712 12593388 ~ 12594022 (-)
G32798 NA non-coding upstream 39908 12965870 ~ 12966103 (-)
G32810 NA non-coding upstream 56494 12982456 ~ 12982781 (-)
G32822 NA non-coding upstream 73180 12999142 ~ 13000643 (-)
G32823 NA non-coding upstream 76269 13002231 ~ 13002542 (-)
G32710 NA non-coding upstream 119857 13045819 ~ 13046163 (-)
G32207 NA other downstream 438954 12376168 ~ 12384780 (-)
G32150 NA other downstream 1042783 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 1410827 11406957 ~ 11412907 (-)
G31203 NA other downstream 2073093 10746437 ~ 10750641 (-)
G30316 NA other downstream 3416813 9377937 ~ 9406921 (-)
CI01000004_14543631_14551256 NA other upstream 1624838 14541515 ~ 14551352 (-)
G33746 NA other upstream 1642831 14568793 ~ 14569264 (-)
G33750 NA other upstream 1652496 14578458 ~ 14579001 (-)
G33755 NA other upstream 1655444 14581406 ~ 14581873 (-)
G33756 NA other upstream 1659209 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016539 b4galt2 coding NC_007113.7 CM002886.2 33476766 ~ 33676494 (-)