G31203


Basic Information

Item Value
gene id G31203
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10746437 ~ 10750641 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU35313
CGGGGTTTGTCCTGTGTCCCTGCCTGTGGTGATCCGAACACAGGACAGTCAATTGTTTCATTCGTACGCACATTTGTTTACTTTGTAAGCTAACGTTCAGTCAGTCTGACAGCCTAACAAACTCTGTGCCGTCACATCACAGTTGTGGCGGTAGAAGACGATACTTGTAAACGGGATGTGAAACGACAATTATTATGTGGCAGAGTTCTTCCGGAGCTGTAAACAACTGTAATGAAGCGATTACAAAAGGAGTTGATGGCATTGCAAAGTGATCCACCTCCTGGAATGACACTAAATGAGAGAAGTGTCCAGAACACAATCACTGAGTGGTTAATAGATATGGAAGGTGCTCCAGGTACTCTTTATGAAGGGGAAAAGTTTCAACTCCTGTTCAAATTCAGTGGTCGATATCCTTTTGATTCACCTCAGGTAATGTTCACTGGAGAGAATATACCCATCCATCCGCACGTCTATAGCAACGGTCACATCTGTTTATCTATTTTAACGGAAGACTGGTCACCAGCTCTGTCTGTGCAATCTGTTTGTTTAAGCATTATCAGCATGCTGTCAAGCTGCAAAGAAAAGAGACGTCCTCCAGATAACTCATTTTATGTAAAGACATGTAATAAGAATCCAAAGAAAACTAAGTGGTGGTATCATGATGATACATGCTAGTATAAACACCATTTTGATATATAAACAGACTTTTCCAAGTGCATCAAGTACTTTATGATACAGTCTTTGGGTTAAGACTGAACCAGCAGACCCTGGGATGGTGATTTATGTATGTCTTAGGCGTACACTTCTGCTGACTGCAAGAAGTGCATAAAACTGCAGGAATGTAACCCATCCGGCAAGTATATTTTGATGGAAGCAAGATGTGGGCATTTTTTCTTTTTTAAAATCGGTTATTTGATTTACGTTGTATTGTTTTCTTTCATAAACTTCTAAGGGTTTTCACTGTTTGTGCAATAATATCTTCAATGTGGGTTTGGAATTAAAGGGATCATGACATGAGAAATCAAATTTGCTTTGATCTTTTGACATATGAGGTCTTTGTACCATTAAAACATCCTGCAAGTTTCATATCTTAAAATGTACTCCTCATTATAAACAAAGCATTGATATAATCAAGCTCCAAAATTGGCTTGTTCTAAGACCTCAACTAATAGTTGTACATCATTGCACCATAGGCCCCGCCCACTGGCATTCAGTGGCTTAATGGCTGACATTTGCCTACACTGGATGTGCATCAAAAGCAAATAGAACCCATTATAATCACTGATGCTGTCTACACTGGATACAGTATACAGATGTGCATTCAGTTTCTGACATACTCCACGTGCTTGAGTCTGTCGACAACAGGACAAATGGAAGATCTCTGTATAGACTCCCAGCTTCGGAAACAAGTGAATGGTTTATTTTAATAGCGTCCTGGATCGCGTCTGAGGATTATGTTTGTTCAGAGCATTTTGTTTTGTCAGCGAAGCATGGTGTAATGGAGAGTTTGCAAAGAAACTTGTTGAAAGATGAAGCAGCCAACTTTATTAGATCTGAAAGTAGCTGCATCACAAAACGCAAGTAAATTATTTCATAATGCTTTGTCTGTAAGTGACGATTTTATATGAATGCTTTCACCACTTACTCGCATGCAATAGTGAATGGGCATTGATACTGTTTCCTATGCAGTGACGTTAGCCAATAATAATAGTGGCTGTTTACTGACACGCCCTAAAAATGGAGCCGCCTCTTAAAAACGGAGGGCCAGAATGAAGGTTGGAAATAACATTTTTTCCATATATATATATTGTGCAGAAACACTTTATTAACTTTATAAGTGAACCTCAAAGAACATATTAAAGATTAAAGTAAAATAAAAATAAAAAATCTATGTCATGACCCCTTTAACAGAAAACTATTGTAATGTAATGGATCAATAATCAAAAGCAGAGACAGATGTTTATTTTCTCCTTGCTTGGTTATGCACTGTGAAATTCAAACAGGGCACATTTGTTCATGAATATTTTATCTATATACTTAAAAAACATAGTTTCTTTTAAAACAAAACTATAGGTGTCCTGCACCTTTGGTCCTTATTCCCTAATAAGCCATTTAAGTTGAATTTTGTAGCTGGGTTTGCTGTATAGTACTATTCTGATAAATGTCATATTTACAGATATGTACAGATTAGATGCAGGGTGTTGATCATATTATATGATCGTAAGGGTAATTTGGAATTACACAAAGAAATGCTTTATGGGTTAAGGTTTAAGCACTGGCTTTATATATAGACCCACATTTTGTGTAGTTAAAATGAGAGATAACTTTTTAGGCATAATCACTTTATCTTTTATGTGAAGCTCTAGTTATATTAAAATGGTCTGTTTGATTTATTGGTTGTATCCTGCTGTGCTGGGTAAGATTCTTTTAAAAAGTTAGCTTTAGAAAACATAAAGTTTGTCTTCATTGTTTTGTTAAAACTTTATTTAACTTTATTTAAAACAAATGTTCTTATTAAAGTAATATATTTTGAAATCCTGTCATGTATTTTAATTAGACTACTTTATAAATGCATATTGTTTGAATAATGAAGTTATTTTCAAACAGACTGTTTGGTATAAGAGAAGTATGTAAATTACACACTTTAGTATTTACGGTAGCTTGTGATTGAATGCTGATCTGTCCACTAGAGGGAAGTATAGTAATGTCATGTGAGCAGATACATTACATTCACATTCATATTTGTTCAGCAAAGAGGTAAACTACTCATTTACACACTTTTTTTTTAATTCAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU35313 True 2796 TUCP 0.36 6 10746437 10750641

Neighbor

gene id symbol gene type direction distance location
CI01000004_10692864_10704094 TRPA1A coding downstream 42343 10692637 ~ 10704094 (-)
CI01000004_10619819_10627261 CNPY1 coding downstream 119176 10619019 ~ 10627261 (-)
CI01000004_10553379_10573352 PAXIP1 coding downstream 171194 10553037 ~ 10575243 (-)
CI01000004_10458668_10465442 NA coding downstream 280734 10458662 ~ 10465703 (-)
CI01000004_10436514_10438365 NA coding downstream 306978 10436499 ~ 10439459 (-)
CI01000004_10757852_10760211 NA coding upstream 6902 10757543 ~ 10761142 (-)
CI01000004_10766385_10766860 TCEB1B, TCEB1, GM14517, TCEB1A coding upstream 15699 10766340 ~ 10766860 (-)
CI01000004_10788659_10809214 JPH1B, JPH1 coding upstream 38018 10788659 ~ 10809805 (-)
CI01000004_10847650_10847940 NA coding upstream 96916 10847557 ~ 10847995 (-)
CI01000004_10884499_10886045 CBLN2A, CBLN2, CBLN2B coding upstream 133785 10884426 ~ 10886045 (-)
G31200 NA non-coding downstream 19295 10726912 ~ 10727142 (-)
G31196 NA non-coding downstream 33506 10712286 ~ 10712931 (-)
G31145 NA non-coding downstream 52703 10693367 ~ 10693734 (-)
G31148 NA non-coding downstream 65430 10676417 ~ 10681007 (-)
G31204 NA non-coding upstream 208 10750849 ~ 10752367 (-)
G31206 NA non-coding upstream 4588 10755229 ~ 10755530 (-)
G31212 NA non-coding upstream 21684 10772325 ~ 10772526 (-)
G31224 NA non-coding upstream 67509 10818150 ~ 10818353 (-)
G31234 NA non-coding upstream 80880 10831521 ~ 10831904 (-)
G30316 NA other downstream 1339516 9377937 ~ 9406921 (-)
G29746 NA other downstream 2388310 8354498 ~ 8358127 (-)
G29656 NA other downstream 2780937 7964364 ~ 7965500 (-)
G29388 NA other downstream 4114530 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 4200865 6538904 ~ 6541252 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 656824 11406957 ~ 11412907 (-)
G32150 NA other upstream 1025878 11776519 ~ 11780951 (-)
G32207 NA other upstream 1625527 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 3800159 14541515 ~ 14551352 (-)
G33746 NA other upstream 3818152 14568793 ~ 14569264 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016467 ube2w coding NC_007113.7 CM002886.2 30193747 ~ 30200206 (-)