CI01000004_10553379_10573352 (PAXIP1)


Basic Information

Item Value
gene id CI01000004_10553379_10573352
gene name PAXIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10553037 ~ 10575243 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_10553379_10573352.mRNA
ACTGTCTTTTCATTGGTGGCTACTTAAAGGATTTTAAGACATTTAAGATGACAATTAAGTTCCACAAAGTGTTCGAGTAAAGTCGTATAGGTGGTTCGTAATATAATTTCGTAATACAATTCAATTTAGCCAACTAATGAATTAGAAAGACTATAACTTCCACGTGACATTCATATTACTTCAACCATTATATCTAAGCGAAGCATCAATCATTGGTAGCCTACATAACGTTGCTCTGCAAGATTTCCACAAGCGCGTATATTCACGGCATTTCACCACAACAGTTTATTGTTTTTCTCCCCTTCCCACTTACCTTTAGGAAACAACACTTTTGCTTCAGCGAAGGCAGTATCACCTCAGTCGGTAGAAAACAATATCCTGAGTGTCAGTCTCTGGATCTCGTGCAAGAGAGGAGTGACCGCGCTACTGCAGTTTCTCAAGTCGCCACCTCGGCGCAGACCACATTAATACAAGGTTAAGAACAGTGTTACCACATCACATCCCAGTGACAAAGACAACCGAGCTGTTTTCTCGTCTGCTCTTTCATTGTACCATGTTTCCTTTATTTTTCATGATTGTAGATTTCTGCAGTCTTTACAAAGGAGAAATTACATTCTCGGAGGCAGCTATTTCAATCTGTGAAAGGCAAACGAACAAGTAGCCTACACAGACTTGAAGCTATGAAGCTGAATAGCACTACTAATAAATGTTTTTCTTATAGGCTTCATTATATTTACCCTGCTTCTAAACCTAACCATCACATTGTTATTATATCTACGGCAATGTATAATTTTGCTCAAATGTCCTTGCAGTGTGGTATGTTATATATTCTTTAAGACTTTTTTTTTCTTTCACAAAAGTGTCCCTCACAAATAAAGCCACTTGTACAGAAAGAGAGAATGAATGAATGAATTCAGAATAGATCTTAGCTGACTTATTGGTTTTGGACTGACAAAGAAAACTGTGAGCAGAAAAAAAGACAAATACTTGTCCTGGCAAATGTTGATATTGTAACCTTATTTATTTACACATTATATCAACATAAGCAATTTTTCTTAATATACCAACAACAATCCACTTCTATTTTATAGATATTTTTCTTTTAATTTTCTTTATGAATGATGATGTCTTCTGACATGTCAACAGCCAGCCAGTGCATACATCAAAATAAAAGGTTTAATATTTAATTTATTTTTTCTTTATAATTATTTTTGTGGACATAATATTTTCGTAACAGTTTCACTAGGTTATGTGTCCACCTTGTTACAACATATTAGGTCATATTAACAGCCCTTTAAAAATGTACTTGAAGGTAACTGAATAGATTTATATAATGATAAAAAATTAGTTAGCCTACATCAAGTTAAAAACAAAATACAGGAAAGTGTAGAACTGTTTAGCAAACACACAAATACGTCTTAAGTTACATTTCTTCCTAAATAAAATGTTTTGGTTCTACAAATGAAACGCTCACAATACAGACACAGAGAAGTGTTTCATATTTGGCGCTTTTATTGATGTAAATAAGCGCGTAGAAAATGACGCGCCGCCCACAAATGTGACGTATTGCACAGATATAGGGGTGTTATGAAATACACAGAATATCGATTTTATAAAACTAAATATTTCCAGTCCAGAAAACTATATGCTAAACAAGATAACTATGGTGATAATGGAATTTGTACATTTTATTCTTGCATTTTATATATTTACTAGACGTAATTGCGTAAAGTGATTTATCTCCCCCCATGAATGACATGTAAGCGCCCAGAGCCCGCCGAATCCTCTTTGGCGCTTCTCTATCTCTTTCCTATGAGCCCGGTTGTGCGCTAATGTGACAGCCACATAATGTTTACTTTCCGCTGTAAAATAATTTAAAGCAGTCAAAACAATGTCGGAAGACGACTTAAAAGTACCGGAAGAGCTTTTCAAGGACGTGAAGTTCTATGTGGTGGGAGACATTGATCAGAAGGTTGTGCAACTTCTGAAAGCTGGGAAAGGAAAAGAAGTGTCTTACAATGCCCTCGCCACCCATATTATAGCAGAAGATGGGGACAATCCAGAGGTTGGGGAGTCCAGAGAGGTCTTTGACTTGCCTGTTGTGAAGCTGGCAGAGGATCTCAACACACTTTGGGCCTTTATCACATTCTATGGAGGTGACTGTCAGCTCCACTTCAACAAGAAGTGCACCCATCTTGTTGTGCCTGAACCGAAGGGGGCCAAGTATGAGTGTGCTTTGCGGCATAGCAACATTAAGATAGTAACCCCAGAATGGATTTTGGACTCTGTAAAAGAAAAGAACAGGAAGGATGAGACTTTATATCACCCACGGCTGACATTATATGAGGCACCAGAAGAGGATGGCAGCGAGTATGAAAATGAGAGGAGCTCAGGTTCTGAAGGCAGCTACAGTGACAGACGCTCGCCACACAGCCGACGGTCCAGCCCTACATCATCCCGCGACGCTTCCCCAGTAGGCAGGCGTAGTCGTTCACCCTCACCGAAACATGAACGCAAATCAGAGTTGATGTTCGATGACTCTGATGACTCCTCCCCAGAGAAGGAAGACCGCAACCTGAACTGGACCCCAGCTGAGGTGCCGCAACCTGGCCCTGCCAAGCGTCGAATACAGCCTGGCAAAGAAACGGGTTTGATCAATCTGTGTGCCAATGTCCCACCTGTACCTGGAGGCTTTGGACCACCAGATACTCGGCTGGTCGGCGCAGGTGGAGGTGTGCCTCTAGGGGTGGAGAGATCGGAGGTCATGGGTGGATGGAACCCAACTCCCAGGACCCTGAGGAACATTACTAACAATGCAGACACGCAACAGGCCTCGCGACCCTCCAATGTGGCACATTTATGCCTGCACAGCTGCACCAACTCTTCGGGCATGAGCCAGGCCAAGACAATCATTCAGGCAAATGGAGGAACTGTGGACTCTGCTCTTAGCCGCTGCACTCATTTACTTTGTGAGAGTCAAGTCAGCAACACCTATCTCCAGGCTCTGAGAGAGGGAAAGCGTTGTGTGACGGCTCACTGGCTTAACACTGTTCTCAAGAAGAAGAAAATGGTCCCTCCTCACAGGACTCTTCATCTTCCCTTCAGCTTCCCTCCAGGGGCCAAGCCCTGCTCGCAGCATATTATTTCTGTGACTGGATTCGTGGACAGTGATCGTGATGATTTGAAGCTCATGGCCTATCTAGCAGGAGCCCGATACACAGGTTATCTGTGTCGAAGCAACACTGTGCTCATCTGTAAAGAACCGAGTGGGCTGAAATACGAGAAGGCAAAGGAGTGGAGGATCCCATGTGTGAACGCCCAGTGGCTGTGTGACATCCTACTGGGGCACTTTGATGCTTTGAGGCAAATCCAACACAGTAGATATTCTCAGTTCAATTTGCCCGAACCACTGGCACCCAACCCGCATTTTGTGCACAATCTTCTGAGTGCTTGGCGCATTCCTGTGAAGATCTCACCGGAGGCGTTGGCGACCTTACGTCTGCAGCTGAAACAGAAACAGGCTGACGTCAACTTGCAGCCACCCAACAAGAGGCCCAAGCTAGAAGAGTTGCCAACACCTACTAAAAAGCTTCCTCCGGAGTCCACACCTTATGTGCTTTTCACAGGCTTTGAACCTCTGCAGGCTCAGCAGTACATAAAGAAATTGTATGATCTTGGAGGGGAAGTGGCTGACAGCACTCAGAAGTGCACTCATCTGGTTGCTAACAAAGTGACAAGAACGGTGAAGTTCCTCACTGCTGTATCTGTGGTCAAGCACATAGTCACTCCACAATGGCTGGAGGAAAGCTGGAAAAGCCAGAAATTTGTGGATGAGCAGAGCTACATGCTGCGAGATGCAGAGGCAGAGGTGTTGTTCTGTTTTAGTCTGGAGGAGTCACTGAAGAGAGCTCATGCAGCTCCGCTGTTCAAGGGGAAGTATTTCTATATAACTCCAGGAATCTGTCCGAGCCTCAGCACAATGAAAGTTATAGTAGAGAGTGCCGGAGGGAAAGTGCTCTCCAAGCAGCCCTCCTACCGCAAGATCATGGAGCACAAGCAAAACAAGAATTTACCGGAGATCATTCTAATAACCTGTGAAAATGACACTCATCTGTGTCGAGAGTACTTCCTGAAGAACATCGATGTGTACACTGCTGAGCTTATATTGACTGGGGTGTTGACTCAGACCTTGGATTATGAATCATATCCTTTTAAAATACATGCAAGATCTAACAAACAAATAAGAAACAATGACTTTTGAGCGGTTTCTGAATCAGCGTGATTCACTGAATCACACACTTTCAGTGATGTCGGACTTCACTCAATGGAACAAGAACCGTTCTGTGTAATTAAGCTTTGTGAAACTCATCATTTCTGACACTATATTTGCAACAGCTTTTTTTTTTGTAATGAATTATGTATGTATGCACGTTTTTCTCCTTAACAGTCTCACATATAAATTCACATGATGTCCTTGTAAGGACATGTATATTATTTGACTGCTGGTGCCCTGCTGTGGATCAATACTAAAGGTTACTTGTTAAATTTTAATGTACAGTCATGTTATATTTCAATGTTTGTATTTTATTACTTGATTAATAAA

Function

symbol description
paxip1 Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Orthologous to human PAXIP1 (PAX interacting protein 1).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K14972 PAXIP1, PTIP; PAX-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_10553379_10573352.mRNA True 4603 mRNA 0.42 17 10553037 10575243

Neighbor

gene id symbol gene type direction distance location
CI01000004_10458668_10465442 NA coding downstream 87334 10458662 ~ 10465703 (-)
CI01000004_10436514_10438365 NA coding downstream 113578 10436499 ~ 10439459 (-)
CI01000004_10290550_10295288 CAHZ coding downstream 257680 10289863 ~ 10295357 (-)
CI01000004_10271350_10272027 NA coding downstream 280831 10271198 ~ 10272206 (-)
CI01000004_09779903_09780536 NA coding downstream 772159 9779235 ~ 9780878 (-)
CI01000004_10619819_10627261 CNPY1 coding upstream 43776 10619019 ~ 10627261 (-)
CI01000004_10692864_10704094 TRPA1A coding upstream 117394 10692637 ~ 10704094 (-)
CI01000004_10757852_10760211 NA coding upstream 182300 10757543 ~ 10761142 (-)
CI01000004_10766385_10766860 TCEB1B, TCEB1, GM14517, TCEB1A coding upstream 191097 10766340 ~ 10766860 (-)
CI01000004_10788659_10809214 JPH1B, JPH1 coding upstream 213416 10788659 ~ 10809805 (-)
G31135 NA non-coding downstream 2396 10544634 ~ 10550641 (-)
G31140 NA non-coding downstream 10848 10541949 ~ 10542189 (-)
G31105 NA non-coding downstream 71915 10480817 ~ 10481122 (-)
G31089 NA non-coding downstream 94434 10456380 ~ 10458603 (-)
G31077 NA non-coding downstream 117501 10434154 ~ 10435536 (-)
G31139 NA non-coding upstream 35040 10610283 ~ 10611074 (-)
G31142 NA non-coding upstream 36576 10611819 ~ 10613648 (-)
G31172 NA non-coding upstream 54701 10629944 ~ 10631721 (-)
G31173 NA non-coding upstream 60927 10636170 ~ 10636383 (-)
G31176 NA non-coding upstream 69583 10644826 ~ 10653508 (-)
G30316 NA other downstream 1146116 9377937 ~ 9406921 (-)
G29746 NA other downstream 2194910 8354498 ~ 8358127 (-)
G29656 NA other downstream 2587537 7964364 ~ 7965500 (-)
G29388 NA other downstream 3921130 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 4007465 6538904 ~ 6541252 (-)
G31203 NA other upstream 171194 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 832222 11406957 ~ 11412907 (-)
G32150 NA other upstream 1201276 11776519 ~ 11780951 (-)
G32207 NA other upstream 1800925 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 3975557 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location