CI01000004_10692864_10704094 (TRPA1A)


Basic Information

Item Value
gene id CI01000004_10692864_10704094
gene name TRPA1A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10692637 ~ 10704094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_10692864_10704094.mRNA
GACACATCTAACCACACTATAAAAACCCTCTCACTAATAGCAAAGAATCCACAACCAAGCCAATATAGAGGAGAATCCAAATGGTGGGCAAAGCAAGGAAACGCAGTTGCTCTGGAGAAGCACTCCAAGTACTTGGACATACGCGACCACATCGGTGCCAGCCCACTGCACTACGCCTCATCCAAGGGATACTTTCGCATAATCAGACTTATTGTGCAGGTCACTGGACAACAAGAGCTCAATGCCAGAGATGAGGAGGGGAATACACCTCTTCACTGGGCCGTGCAGAAGGACCAGCCAGGGAGCTGCTCTGTGCTGCTGACTCTGGGAGCAGATCCTAACATCCTAAATAACAGCCAGCAGGCACCGCTACATATGGCAGTCAGCCTGGGCAAAAATTTTGTGGTAGAACAACTTGTCTTACATAAACAAACTGATGTGAACCTGGAAGGAGACATGGGAAACACCCCTGTTATTTTAGCTGCTTCTTTGGATAACCATGAGGCTCTGGTCATATTGAACAAACTTGGACATTTTCCAATTCATGCTGCTGCTTTTGCCGGAGCTAAGAAATCCATGGAGGTCATTCTTCTGAAAGGAGAAGAAGTCGGTCTGTCCATTGACAACCATGTAAACTACGTGGATAAATCTTGCAGCAGTCCACTCCACCTGGCTGTACGTGGAGGGAATCTTGACATCATTAAACTCTGCATTGCATATGGAGCAAAAATTGATCAGCAGCAGTGTGATAAATCCACTGCTCTCCACTTTGCATGTAGTCAAGGTGCCATTGAGGTTGTTAAAGTCATGCTCTCAGCTTACCATAAAGTGTGTGACCTTATCAACATCACTGATGGGGCCAACCAGACACCTCTACATAAAGCAGCGATTTTTGATCACTTTGAACTCTCCGAGTACCTTATATCACAGGGTGCTGACATTGACTTTGTTGACTGCAAAGGCCATTCTCCACTCCTTCTGGCAACAAGTTGCGGAGCATGGAGAACTGTCAGTCTGCTCCTCTCCCATGGGGCTGATCTGAAGAAAAAAGACAAATCTGGATGCAACTTCCTGCATCTGGCCATCCTGCAGCCCAGGGGTCTGAAAAACCTGCCTACAGAGGTACTGCAGCACGAGAGTGTGAGAGAGCTCCTCAATGATGAGGATATTGAGGGCTGTACTCCCCTCCATTACGCCTGTAGACTGGGAATACCAGAGTCTGTGAAGAACATGCTGGGATTAGAGGTTTCGCTGGACCAAAAGTCTAAACAGAAGAAATCTGCACTTCATTTTGCGGCCGAATTTGGGAGGATCAACACGTGCCACAGGCTTCTGGAGATGGTGACAGACACCAGACTGCTGAATGAGGGGGATGAGAAAGGACTGACACCTCTGCATATGGCCTCTCGTGGAGGTCACGTTAAAGTAGTTGAGCTTCTCCTACGCAAGGGGGCGCTGTTTCACAGTGACTATAGAGGATGGTCTTGTCTGCATCATGCTGCATCTGAAGGATACACTCAGACCATGGACACTTTGCTGACATCTAACATCAAACTTCTAAACAAAACTGATGGAGATGGGAACACAGCACTGCATCTGGCTGCTAGAGCAGGTCATGTGGCAGCCGTAAGACTTCTGTTATGCAGAGGGGCCAAGATCATCCTCAATAAGAATGATGCCTCTTTCTTGCACGAGGCTGTACATAATGGGAGGAAGGAGGTCACCAACACTGTGATTGAGAGTGACAGATGTGAAGAAGCGATGACATCGTACAAACCAAACTCAACAAAACGCTGCATTGTCATGGACATGATTGAGTTTCTTCCAGAGTCCTTTAAATCTATGGCGAATTTTAATCGTGTCAGCTTGCTGACCCATCCAGTCTGCAAGAAATATTTGGAGATGAAATGGAATGCCTATGGGATCAAAGCACATCTGCTCAATATGACTGTGTATGCGCTGGGGGTGTTTCCTTTAACTTATCTCATTGTGAACCTGAAGCCCACATTGGTCACTGCAAGAAATGTCACATCAGTCAACATGGTCTGCACGTCCTTGTACAAGCAGTCCTATATAACAACAGCATGCATGCTGCTGGTTCTTACTATGAACATGTATGCAGTTGGGAAAGAGATCCTGCAAATGTTTCAACAGCGGGTGAATTATTTGCGAGATTTTTCTAACTACATGGACTGGGCCGCTGCGATCTGTTCTCTGGTGTTCGTGGTGCCGTTGCTGATGAATGCGAAGAGTTCCTGGCACTGGCAAGCTGGAGCACTGGCAGCTCTGGCCTCCTGGATAAATCTCCTCCTCTATCTTCAACGGTTTGAACGGATTGGTATATATGTGGTAATGTTTCGGGAGATCTCACGGACACTGCTGAGCATTATCGTGTTGTTCTTCTACTTGATATTGGGATTTGCTTTGTCCTTCTATGCCTTGATGATCGAACAGCAACATTTTGGAAGGATGTTCCTGTCACTGCTGCAAACCTTTGTCATGATGGTTGGAGAAATCAACTACCAGGACAATTTCTTGAAACCCTACCTGCAAGGAGACCTTCCTTTTCCAAACTTGACATTGGCCATCTTTATTTGGTTTGTCTTACTCGTGCCTATTCTTCTCATGAACCTTCTGATTGAACTTCACACTCATCTGGAGGAGAGGCTTCCCTATTGGTTTATGAAGCGGGTGGACCAGGTCTCCATCAAAGAATTCCCAAACAGATGCTTCAGTGGAAAGAAAAGATGGTTTTTCGGTGGGAATGAGGTGAGGAAGTCCAGGACCCGTCTTAGTCCCACCATCCACCAGTTAACTCCACTGGAACGGGAGCTAACCAAACAGAAATACAGGCTGAAGGAGATATCGGACACTGTGGAAAAGCAACACAGCCTGCTAAAGCTCATAGTGCAGAAGATGGAGATCAGCTCAGAGGCCGAAGAACATGACGGACCCCCAGTCTTTCAGGAGCTGAAAGAGAAACTCCTCACCAGGAGCAAATGGGGTCCGCTGCTCAGGGCAGTGACCGCCAGAAAGAAGGGACTCTGCAATTTTGTAAAAACGTCATGAACGTCATGTTTCAACGGAATTGTTGTATTTACTCATAAACTGTGATGACATGGCTAATATTTCCTATTAATACCTTGCTTCTGTACAACAATCAAGGCTAAAACCAGATACCAAGCATCTAGTATTGTGTCTCCATTGGGTCATTATTACTATAAATTCAACCAAAGGTAAAACCTGTTTTTATTACTGAAAAAGCAATGCAAATTGGTTGTTCATTCATTAATAAA
>TU35243
GCATGTTCAAAAAACGTCTCCCCTACAGTCTATGGCGAATTTTAATCGTGTCAGCTTGCTGACCCATCCAGTCTGCAAGAAATATTTGGAGATGAAATGGTGAGTTACCTATTGCTAAAACCTGAATTTGGCATGTTTGATGTCTCAACAAACATCCTGAGCTTTTGTAACCCTTTTTTTTCTACAGGAATGCCTATGGGATCAAAGCACATCTGCTCAATATGACTGTGTATGCGCTGGGGGTGTTTCCTTTAACTTATCTCATTGTGAACCTGAAGCCCACATTGGTCACTGCAAGAAATGTCACATCAGTCAACATGGTCTGCACGTCCTTGTACAAGGTACAATATACTAAGGGAATTCATCAAAAAATTGAGGTATAGTATGTTATGATACTGTATGGATCAAGAAAAAAAAATGATGCAAATTCTCTTTGCTTTACACAGCAGTCCTATATAACAACAGCATGCATGCTGCTGGTTCTTACTATGAACATGTATGCAGTTGGGAAAGAGATCCTGCAAATGTTTCAACAGGTTTGTTTTACGCTGCACTTAATATTGCCAACCTTACCTGTATTAAAGGTGCAATATGTAAGAATTTTGCAGTAAAATATCCAAAAACCACTAGACCAGTGTTATATATTTTGTTCACTTGAGTACTTACAATATCCCAAATGTTTGCAACTATTTGTAAATCATGAGAAAATTGCAGTTTTAACCAAGGCTCCGGGACGTGTGAGGAGTCGCCTGTCAATTGCGTCATATCCGCGTTACCCTCGTTTTCCGGTTTTATTTTGTAGAAACCAAGGAAACACCAAAGACGCTTTAATATTTACATGTTTAATAGGCAAGGGAACAACTGTTTTGATATATTTATAGACAGAAAATTAATCATTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTGTGAGTATCATACTTTACCATGCCTCAGAAAAAAACACTATTTTGTGAAGTAGCTAACATAGCATAATCAGATGCAGCTTTGTTTTTAGTAACAGTAATACAGAATTTTCTTCATCATACAATACGTTTTAAAATGAATTGCATGCCATTTATCAACACAAGCCATCCAGCATTTAATATGATATTCTAAAATCGATCTAGCTTACTGCAGTGTGCAACAGTGTCTCACAGCAGCCACCGAGCGAACACACAGAGTAACTTTATAACATCATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCAGAGGAGGCTCATCTTCCCTTGACTCCTCTGACCGCTGGACTTAAATCTCTCCATTCTATCCATTTCAAAAGATTTTGATCTTGAAAGTTCAAGTATGCCTAATCATTTTAACTGTGGCTTGCCTTTGGAAGCGGGTGAATTATTTGCGAGATTTTTCTAACTACATGGACTGGGCCGCTGCGATCTGTTCTCTGGTGTTCGTGGTGCCGTTGCTGATGAATGCGAAGAGTTCCTGGCACTGGCAAGCTGGAGCACTGGCAGCTCTGGCCTCCTGGATAAATCTCCTCCTCTATCTTCAACGGTATTGGACTGAATGACAATACATCCATAGAACAGAATTATGTAACAGAAGCCTTTTAAGGACTTATCATCTGTAATCTCTCATGGTTGTAGGTTTGAACGGATTGGTATATATGTGGTAATGTTTCGGGAGATCTCACGGACACTGCTGAGCATTATCGTGTTGTTCTTCTACTTGATATTGGGATTTGCTTTGTCCTTCTATGCCTTGATGATCGAACAGGTGAGTATATGAGTGTTGTTAAACGTAAAATGATTAATATGACTAACATAGATTTAGGAAAACTAGCTTTAATGCTTTAAAGCTCCATTTAAAATATGAATTTATTTTACAGCAACATTTTGGAAGGATGTTCCTGTCACTGCTGCAAACCTTTGTCATGATGGTTGGAGAAATCAACTACCAGGACAATTTCTTGAAACCCTACCTGCAAGGAGACCTTCCTTTTCCAAACTTGACATTGGCCATCTTTATTTGGTTTGTCTTACTCGTGCCTATTCTTCTCATGAACCTTCTGGTAAGTCCAAAAGAAAACAGTCTGAATTAAAAATAAAACTACAATCCAGTATGTCAGATTCCAATCAAACAATGTATTTTGAGTTTAGATCGGTTTGGCTGTTGGTGACATAGCAGAGGTTCAGACAAATGCATGTTTAAAGAGGATTGCAATGCAGGTGATTCCGCACAACTCTTAATATTGTGTCCTAATAAAAAGAATAAAATATTTCTCCCTATAAACAATGGTTTACTGTCAATCTACTCCACAGATTGAACTTCACACTCATCTGGAGGAGAGGCTTCCCTATTGGTTTATGAAGCGGGTGGACCAGGTCTCCATCAAAGAATTCCCAAACAGATGCTTCAGTGGAAAGGTCTGACAGCCTAACATGATATTGATAAGATTATATTGATCTTTCAAAGGGCAAAGCAACTCTGATAATTGTGCAGTAGATTGTAAACCAATAAATGCCTTGGAATGGTAGCAAACTCCAACATGTTTCTCTAGTTTACAAACACAGTGCAGTTGAGTAATTTTGAATTCGAATACAAATTAGGGCTTTTTGAACAGCTCCATAAAGCATTCTCTGTAAAAATGCTTAATATTTTTGGTTAAAAAAACATTATAGTTCAACCTTGGTGAATGCAATTTCCAACAGTTATTAGAGCTGATTTAATGTGCTTGTGAACAGAAAAGATGGTTTTTCGGTGGGAATGAGGTGAGGAAGTCCAGGACCCGTCTTAGTCCCACCATCCACCAGTTAACTCCACTGGAACGGGAGCTAACCAAACAGAAATACAGGTAACACCAATCTGACAAATAATAAACAATGTTTAACTGAACTTAATTAGACAAACTTAAAGGGATAGTTCACCCAAAAATGAAAATTATCCAATGATTTACAGCCATCCTAGGTGGTGTTCCTAGGTAGTGAAGGGGGGGGGGGGGCAGATTTTGAAGCCCCAAAAAATTCATCTATCCATTATAAAAAATAATCCATACGGCTCCATGGGGT

Function

symbol description
trpa1a Enables calcium-release channel activity and mechanosensitive ion channel activity. Acts upstream of or within detection of chemical stimulus; detection of mechanical stimulus involved in sensory perception; and ion transmembrane transport. Predicted to be integral component of membrane. Is expressed in integument; keratinocyte; and vagal ganglion 4. Human ortholog(s) of this gene implicated in familial episodic pain syndrome 1. Orthologous to human TRPA1 (transient receptor potential cation channel subfamily A member 1).

GO:

id name namespace
GO:0050960 detection of temperature stimulus involved in thermoception biological_process

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_10692864_10704094.mRNA False 3296 mRNA 0.46 24 10692637 10704094
TU35243 True 3083 lncRNA 0.38 1 10693827 10696909

Neighbor

gene id symbol gene type direction distance location
CI01000004_10619819_10627261 CNPY1 coding downstream 65376 10619019 ~ 10627261 (-)
CI01000004_10553379_10573352 PAXIP1 coding downstream 117394 10553037 ~ 10575243 (-)
CI01000004_10458668_10465442 NA coding downstream 226934 10458662 ~ 10465703 (-)
CI01000004_10436514_10438365 NA coding downstream 253178 10436499 ~ 10439459 (-)
CI01000004_10290550_10295288 CAHZ coding downstream 397280 10289863 ~ 10295357 (-)
CI01000004_10757852_10760211 NA coding upstream 53449 10757543 ~ 10761142 (-)
CI01000004_10766385_10766860 TCEB1B, TCEB1, GM14517, TCEB1A coding upstream 62246 10766340 ~ 10766860 (-)
CI01000004_10788659_10809214 JPH1B, JPH1 coding upstream 84565 10788659 ~ 10809805 (-)
CI01000004_10847650_10847940 NA coding upstream 143463 10847557 ~ 10847995 (-)
CI01000004_10884499_10886045 CBLN2A, CBLN2, CBLN2B coding upstream 180332 10884426 ~ 10886045 (-)
G31148 NA non-coding downstream 11630 10676417 ~ 10681007 (-)
G31190 NA non-coding downstream 21793 10670441 ~ 10670844 (-)
G31186 NA non-coding downstream 25502 10666929 ~ 10667135 (-)
G31184 NA non-coding downstream 27478 10664784 ~ 10665159 (-)
G31179 NA non-coding downstream 38698 10653690 ~ 10653939 (-)
G31196 NA non-coding upstream 8192 10712286 ~ 10712931 (-)
G31200 NA non-coding upstream 22818 10726912 ~ 10727142 (-)
G31204 NA non-coding upstream 46755 10750849 ~ 10752367 (-)
G31206 NA non-coding upstream 51135 10755229 ~ 10755530 (-)
G31212 NA non-coding upstream 68231 10772325 ~ 10772526 (-)
G30316 NA other downstream 1285716 9377937 ~ 9406921 (-)
G29746 NA other downstream 2334510 8354498 ~ 8358127 (-)
G29656 NA other downstream 2727137 7964364 ~ 7965500 (-)
G29388 NA other downstream 4060730 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 4147065 6538904 ~ 6541252 (-)
G31203 NA other upstream 42343 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 703371 11406957 ~ 11412907 (-)
G32150 NA other upstream 1072425 11776519 ~ 11780951 (-)
G32207 NA other upstream 1672074 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 3846706 14541515 ~ 14551352 (-)
G31145 NA non-coding downstream 93 10693367 ~ 10693734 (-)

Expression


Co-expression Network