G31148


Basic Information

Item Value
gene id G31148
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10676417 ~ 10681007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU35253
TTCAAAGCATTCGCGCTTTTGGCTTCCAGCTTTTCGGAGGAAAACGAAACACAAATAGCTGTTTCTGCAATGAGGGGGTGAAAAAAGGAAGTGCTGCTTCATGTTAGCTACACATTCAGGCACTGAGGTAAATGATGGTGCCCTGCTGTGCAATATGAAGAAGCTTTAAGTTTGTGAAGTTCAGCCTGTTGAGACAACCCTAGGAAGAAACCTTGACCTGCTAAATCACAGCCATACTTCCATCTCTCTCTCTCCCTTCTCTCTCTGTCCCATTTGTCCCTTCAGGATGGTGATGTCTAATTTTATCCATGGTTATTGAATAACAGTTCATGAGAAGGCAGAATCAGAGTCAGGTTGAATAATCGATCGTGCCACTCTTGCCGCTATAAATAGAAGTGGGCTAAGTGCCTCATCAGAGGGATGGAGAGGCCTGTGAAAAAGACTTCGCTGCGAACAAGGTTCAGTGCCTTCAAGAGATAAGGGTCATAAGTCAAATTTGTTGATTGATGAGAGATATATTTACATTAAAGATTATTTGAAAGAATATCATCACACATAGATTCAGTGGCTCTAAAGAAGCGAAGTCTATTTAATCTTAAGTGTTTATTGCATGGCAGAGGTGAGTGGTGAGGTTCACTGGCTTTAAAGTAATTTGCAACTTAACACCTACACTACTTCACCTCACCACTTGAGGGCTTCACAACACCTCAGACATCAGTTTGGCAGACAACAATCATGGTTATAAATCACTGCACACCCAAGCTTGGCTGGTCTCCTTTTCCAGCACATTCTGATGTACAATATCACCAGAGAGGATTACGCATCTGTGGATTCATAATTGTTACAAGTTGATAAATGTTGACATAAAAAGATTATATTTTTTTATACTGTTAGTAAAAAAAAAAGCCCATATAAAAGTAAAAATGCCCTTGAAAATCAAGTGGCAATCTGAACAAATTAAATGGATGATGATTGGCATCTTGGTTGCACTTTATTTTACAGTACGTGCACTTACAGCATACTAAGAAAGTACTGGTTAATATAACGGGTTATGGTTAGTGGGTTCAGGGTTGGTACCTAGTTTTTACCCAGTTATTGTAATAACTACAATAAGCAAATATTATGTGCATGGGAAACAAGACTAAAATAAAGTGCTACCGATATCTTTGTCTTCACTTGTCAGTAATCTGTAAGTTTCAGATGCATTTACACTAACTGTTCCAAAGTTTGGGGTTAATAAGTTGAACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU35253 True 1248 lncRNA 0.39 2 10676417 10681007

Neighbor

gene id symbol gene type direction distance location
CI01000004_10619819_10627261 CNPY1 coding downstream 49156 10619019 ~ 10627261 (-)
CI01000004_10553379_10573352 PAXIP1 coding downstream 101174 10553037 ~ 10575243 (-)
CI01000004_10458668_10465442 NA coding downstream 210714 10458662 ~ 10465703 (-)
CI01000004_10436514_10438365 NA coding downstream 236958 10436499 ~ 10439459 (-)
CI01000004_10290550_10295288 CAHZ coding downstream 381060 10289863 ~ 10295357 (-)
CI01000004_10692864_10704094 TRPA1A coding upstream 11630 10692637 ~ 10704094 (-)
CI01000004_10757852_10760211 NA coding upstream 76536 10757543 ~ 10761142 (-)
CI01000004_10766385_10766860 TCEB1B, TCEB1, GM14517, TCEB1A coding upstream 85333 10766340 ~ 10766860 (-)
CI01000004_10788659_10809214 JPH1B, JPH1 coding upstream 107652 10788659 ~ 10809805 (-)
CI01000004_10847650_10847940 NA coding upstream 166550 10847557 ~ 10847995 (-)
G31190 NA non-coding downstream 5573 10670441 ~ 10670844 (-)
G31186 NA non-coding downstream 9282 10666929 ~ 10667135 (-)
G31184 NA non-coding downstream 11258 10664784 ~ 10665159 (-)
G31179 NA non-coding downstream 22478 10653690 ~ 10653939 (-)
G31176 NA non-coding downstream 22909 10644826 ~ 10653508 (-)
G31145 NA non-coding upstream 12360 10693367 ~ 10693734 (-)
G31196 NA non-coding upstream 31279 10712286 ~ 10712931 (-)
G31200 NA non-coding upstream 45905 10726912 ~ 10727142 (-)
G31204 NA non-coding upstream 69842 10750849 ~ 10752367 (-)
G30316 NA other downstream 1269496 9377937 ~ 9406921 (-)
G29746 NA other downstream 2318290 8354498 ~ 8358127 (-)
G29656 NA other downstream 2710917 7964364 ~ 7965500 (-)
G29388 NA other downstream 4044510 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 4130845 6538904 ~ 6541252 (-)
G31203 NA other upstream 65430 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 726458 11406957 ~ 11412907 (-)
G32150 NA other upstream 1095512 11776519 ~ 11780951 (-)
G32207 NA other upstream 1695161 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 3869793 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location