G30316


Basic Information

Item Value
gene id G30316
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9377937 ~ 9406921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU34308
AAAAAATTACATAAAATTACACAGCACAATATTTCTCACCTGGCAGCCTGCGTGAGACAGAAATGTCAGCTCGCTTTAAGAAGAGCCACAACGACTACATTTCCCACAAGGTCCTTCATCGGATTCTTGCCACTGATCTCCCACTGTGGGGCAGGCTTACAGATCCTGGAGCCAGCGCTTTCCTTCTCCACAAACAGTGGTGAAGCTCCCAGCAGAGCTGGAAAAGCAGACAACCACAGAGCCCAGAGAGCCTGCATCATGCCTGCTGAACTTCACTCACTGCAACAGCTAAGCTCTGTCTCTAAGCCTTCTCTGGATCAAAAATACAGACATGAGAAAAAGTTGACTGTCCACACATTTAAAGGTCTCTTCTGGACAAACCCTCCCCCTCAACAAACAGA
>TU34309
ATATTAGCTCTATCATATGATGATGGAAATTAATTTTTATTCAGCTCTTTACATCTTACACCACTCTAGGTGAACACATTCCCATAACATATCATATAGCTAATATATTAACAAATACAAAGCAGTTATCATAATAAAGAGAATGCTTTAGTTCAGCAATGTCACATATTCCTTAATAGGAAGGTGGAAAACAGAAGTATAGTGTAAATGACTGCTTTGCTCAACATCCGTATGCAGAACCCTGACTCAGGTTTAAAGTGCACACTTCATTAAGAACAATGAGATCCTACTTAAATCCCCCTTTAAGGTCAATATATGACATAGCTCTGTATATTTACATTAAAAAAAAATCATCATCATTTTTTTTTTTTCATTTCAAATATCAAAATACAACATTTATTGGAAAACAAAACTGTTCTAAGATCTAATGTTCATGAGATGAGAAATGAGAATGCTCGGTTGGCTCTTTTGGTCTGCGGGTCACTTCTGAATAACCTGTTCTGTTTCTGTTATTTGAATAATGATGGTGATGATGATGCACATGTTGATGATGATGCACATGTTGATGATGATGCTCATGTTGATGATGATGCTCATGTTGATGATGATGCTCATGTTGATGATGATGCTCATCATCTACAGGCTCTGTATTGTTAGTCTGCTGGTTGCTCTCTCCTTTGGGCTCAGCACTGTTTTTAGTGTTGCCAGAGCCTTCTGATATGGAGAAGTTGGCATTTATGAGCAGTTGCATATATCTTTGTGGTATGTAGCCCTAATGGCAGCTTCTATATAAGGGTAGTGAAGAAAGCTGAAGGGCAGGACTATGTGGAAGGTGAGATATCCACATCTATGCAGAAAAGAAATACAAAAGAATGACCATGACAGTGAACACAATAAACAATGCTTGAGAAATTAACTCAGAAGTTCATTCTTCTGCATATGAATACAAAAAGAACCATGTGACCCTAAAGGGAAACTAGTCAAACTGGTCATATTAGTCTGTACTGGATTTAGAAGTGTTTTGTTCATACCTGTCATACACTAAGAAATCATCCTTGTCTCCCTCCAAGAGCTCCCAGACGTCGTTTTGCAGTGGGCTCTGCTGATACACAGGGATGCCCTCTGCCGTCCTCCTCTTCAGCTCCCAGTACATGGCTCTGGACTGCGCATCCTGCTCATTGACGACCAGGAATGATATGTTAGTCAGCTTGCCATTGACCAGCTTGTCACGCAGGCCTCCCAACCTTTCGAACCAACTGGCAGCCTGCGTGAGACAGAAATGTCAGCTCGCTTTAAGAAGAGCCACAACGACTACATTTCCCACAAGGTCCTTCATCGGATTCTTGCCACTGATCTCCCACTGTGGGGCAGGCTTACAGATCCTGGAGCCAGCGCTTTCCTTCTCCACAAACAGTGGTGAAGCTCCCAGCAGAGCTGGAAAAGCAGACAACCACAGAGCCCAGAGAGCCTGCATCATGCCTGCTGAACTTCACTCACTGCAACAGCTAAGCTCTGTCTCTAAGCCTTCTCTGGATCAAAAATACAGACATGAGAAAAAGTTGACTGTCCACACATTTAAAGGTCTCTTCTGGACAAACCCTCCCCCTCAACAAACAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU34308 False 401 lncRNA 0.48 2 9377937 9378476
TU34309 True 1618 TUCP 0.45 5 9377937 9406921

Neighbor

gene id symbol gene type direction distance location
CI01000004_09367511_09370243 TOE1 coding downstream 7694 9367461 ~ 9370243 (-)
CI01000004_09329111_09337596 NA coding downstream 40341 9328986 ~ 9337596 (-)
CI01000004_09324170_09327754 DSELA coding downstream 50183 9323546 ~ 9327754 (-)
CI01000004_09179343_09182737 NA coding downstream 194219 9177975 ~ 9183718 (-)
CI01000004_09159241_09169070 NA coding downstream 206220 9158475 ~ 9171717 (-)
CI01000004_09425074_09426973 NA coding upstream 46491 9424967 ~ 9428395 (-)
CI01000004_09486618_09488654 UROD, DCUP coding upstream 107881 9486357 ~ 9488654 (-)
CI01000004_09490844_09498265 LYN coding upstream 111803 9490279 ~ 9498265 (-)
CI01000004_09503523_09520686 TGS1 coding upstream 123582 9502058 ~ 9521982 (-)
CI01000004_09534571_09550154 XKR4 coding upstream 156042 9534518 ~ 9550418 (-)
G30280 NA non-coding downstream 72313 9305390 ~ 9305624 (-)
G30276 NA non-coding downstream 98007 9279720 ~ 9279930 (-)
G30272 NA non-coding downstream 103185 9274499 ~ 9274752 (-)
G30108 NA non-coding downstream 115102 9262628 ~ 9262835 (-)
G30101 NA non-coding downstream 120621 9257050 ~ 9257316 (-)
G30369 NA non-coding upstream 279448 9657924 ~ 9658522 (-)
G30370 NA non-coding upstream 280272 9658748 ~ 9659060 (-)
G30376 NA non-coding upstream 310415 9688891 ~ 9689116 (-)
G30377 NA non-coding upstream 310798 9689274 ~ 9689506 (-)
G30412 NA non-coding upstream 369870 9748346 ~ 9748560 (-)
G29746 NA other downstream 1019810 8354498 ~ 8358127 (-)
G29656 NA other downstream 1412437 7964364 ~ 7965500 (-)
G29388 NA other downstream 2746030 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2832365 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3750423 5616644 ~ 5628289 (-)
G31203 NA other upstream 1367961 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2028989 11406957 ~ 11412907 (-)
G32150 NA other upstream 2398043 11776519 ~ 11780951 (-)
G32207 NA other upstream 2997692 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 5172324 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location