CI01000004_14543631_14551256


Basic Information

Item Value
gene id CI01000004_14543631_14551256
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14541515 ~ 14551352 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14543631_14551256.mRNA
AGTAAGTGTGGGAGGAGCTCGATGTTAAATCAAATAGACAACACTGACTTCCCTTCATACTGATACTGATAGAATCTGAACTCAAACTACAGAAACATGTTACTCATCACTTCTGTTTTAATATTTATCCTCAGTTACTGTGAAGCGAATGGGAATGTCATCAGACCAGATCAACCATCTGTAGTTTTAACTGAAGGAAGCAGCATCAGTCTGTCCTGTACATTTGATGGATCAGCTTACAGTCTCCACTGGTACCGGCAGATGCCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGTGAAGTCTACTAAAACTGAAGTTCAAGCTTCTCCACCTCACCCGCATATGTCCATCAGACTTCATGATAAACGTGTGGATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCAGTGTATTACTGTGCTCTGCAGCCCACAGTGACAGGAAAACCATCTACACTGTACAAAAACAGATTTCTTTGGTACCGTCAGTATCCCAGATCCAAACCTGAACACCTAATATTGTTCTTTGAGTCTAAACCCAAACCAAAGCCCTCTCTCCGTCTGACCGCTGCAGCTGATAAAGCCATCAAACATATGAATCTGACGATCTCTTCTACAGAAGTGAAAGACTCTGCCATGTACTACTGTGCCCTGATGTTGCTCCTGGTATTCATTTTATTTTCTCTGCTAAAAGAGAATGCTGCTGCAGACGTGATAACACCGTTATTCACAGATAAGCATGTTTTGGAAGGAAAAGATGTTACACTGAAATGCAACTACACTGGCAGTGTTCAAAATTTGCAGTGGTACCAGAATGCTGCTGCAGACGTGATAACACCATTCTTCACAGACAAGCATGTTTTGGAAGGAAAAGATGTTACACTGATCTGCAACTACACTGGCAATGTTAGAAATTTGCAGTGGTACCGTCAGTATCCCGGATCCAAACCTGAACACCTAATATTGTTCAATGAGGCCGAAACCAAACCAGAGCCCTCTCTCCGTCTGACCGCTGCAGCTGATAAAGCCATCAAACATATGAATCTGACGATCTCTTCTACAGAAGTGAAAGACTCTGCCATGTACTACTGTGCCCTGCAGCCCACAGTGACAGGAAACACTACTGAACCCTACAAAAACTCAATGAGAAATTATATTCAAGGCAGAAGATCATGATGCTCAATTTAAAAAAAAAAAAGTTTCTAAAATATTTAATATGCTGTATATTGTTGCTTTTATACCATTTAAACAAATGTTTGAACACCATTTACTTGTTAATTGTTGGCCATTTAAACCTCTGGGCCTCTTGGGAAAAATTTTACATTTTGAAATTTGTAATTTTTCTGCTTCATCGTAATGGGATGACACTTGGTGACTTTAGCTATGTGAACACAAAAAAAAAAAAAAAAAAAAAAAAATCATGGACATGATTCAGATATGTTAAAGGGCCGAGAAAAAAGTCACACTTGGCTTCACACTATTACACAACACACTATTATACACACACAAGTGAACTGGTGTGGCTGTAACAGTAAGTTAAAATTGAGCCAAAAGACTCAAAGAAGAGGTTGAAATCAGATCAGACCCAGAATGATTAAGCTGTGATAAAGCATACCTGTTCATTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGACTGCCCTGCTCTCAGTCACTGAAGCCCTGAGACTGGCACGAGCAACTTCACAATCATCAGTACTCATCTTACTGGATCTGTCTGCTGCTTTCGACACAGTTAACCACCAGATCCTCCTGTCAACCCTCAGGTTGAAGGGCATCTCAGGAACCACACTCCAGTGGTTCGAGTCTTACCTCTCGGGTAGGTCCTTCAGGGTATCTTGGAGAGGTGAGGTGTCCAAGTCACATCATCTTGCTACTGGGGTACCTCAGGGCTCTGTGCTTGGACCACTTCTCTTCTCCATCTACATGTCATCACTAGGATCTGTCATTCAGGAACATGGTTTTTCCTATCACTGTTATGCTGATGACACACAACTCTACCTCTCATTCAAACCAGATGATCCGACAGTTGCTGGTCGCATCGCAGCCTGCCTGACAGCCATTTCTGCCTGGATGAAGGACCACCACCTTCAACTCAACCTTGCAAAAACGGAACTGCTTGTGGTTGGTGCCAACCCAACACTTCATAATGACCTTTCCAGGACGGCCAGAAACCTCGGAGTGGTGATGGATGATTGTTTAAGCTTCACAGATCACATCGCTACAACGGCCCGGTCCTGCAGATTTGCTCTGTACAGCATTAGGAAGATTAGACCCTTCCTATCGGAGCTTTCCACACGAATTCTTGTCAAAGCTCTTGTTCTATCCAGACTGGACTACTGTAATGCTCTCTTGGCAGGCCTTCCAGCATGCACTTTCAAGCCTCTACAACTGATCCAGAATGCTGCAGCAAGACTGGTCTTTAATGAACCAAAAAGAGCGCATGTCACACCTCTCTTCATCAGTTTCCATTGGCTGCCAATTGCTGCTCACATCCAATTCAAGGCTGTAATGTTTGCCTACAGAACATCCACTGGCTCTGCACCACTATACCTAAACCCACTACTTCAGACTTATGTGCCCTCCAGAAGCTTGCGTTCTGCAAGTGAACGGCGTCTTGTGGTGCCATCCCAAAGGGGCACAAAATCACTCTCACGGACCTTCTCTTGGTCTGTTCCTGGTTGGTGGAATGACCTACCACGCTCTATCCGAGCAGCTGAGTCTTTAGCCATTTTCCAAAAACTGCTAAAAACATATCTTTTTCGTCAACACTTGACCCAGTAATATAGCACTTTTTTTTTTTTGTATTTTACTTTTCATTTTTCGATTTTCTATATTTGCGTATATATTTAAAAAAAAAAAAAAAAACCCAACCTAGCTACGAGCACTTTACTGATGAAACTGTGACTTGACACAGCACTTACATACTGTTGTACTAATGTTGATTTGATTGCTTCTACTATTCTCATTTGTAAGTCACTTTGGAGAAAAGCGTCTGCTAAATAACTAAATGTAAATGTAAATATAAATGTAAAAATAAATTTAATTTCAAGGTTTCAGACACTTTTGACTGTGAAGGAGTCAAGTGTGACCCCTAAATGAGCAAAACCTTGAACCCATCAGGCGGTTACTGACATCAGCTTTTAGGTTCTAAGCATGAAAATGAATTTGTATTAATTAAACAAAAGTTAATAAA
>TU38237
ATAGAATCTGAACTCAAACTACAGAAACATGTTACTCATCACTTCTGTTTTAATATTTATCCTCAGTTACTGTGAAGCGAATGGGAATGTCATCAGACCAGATCAACCATCTGTAGTTTTAACTGAAGGAAGCAGCATCAGTCTGTCCTGTACATTTGATGGATCAGCTTACAGTCTCCACTGGTACCGGCAGATGCCTGGATCAAGACCAGAGTTTCTGCTGCTGATTGTGAAGTCTACTAAAACTGAAGTTCAAGCTTCTCCACCTCACCCGCATATGTCCATCAGACTTCATGATAAACGTGTGGATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCAGTGTATTACTGT

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14543631_14551256.mRNA False 3298 mRNA 0.40 6 14541515 14551352
TU38237 True 358 TUCP 0.38 2 14550800 14551284

Neighbor

gene id symbol gene type direction distance location
CI01000004_14425486_14425711 NA coding downstream 115804 14424179 ~ 14426902 (-)
CI01000004_14389315_14396492 NMNAT2 coding downstream 145023 14389035 ~ 14396492 (-)
CI01000004_14115087_14115790 TCTEX1D4 coding downstream 425725 14115005 ~ 14115790 (-)
CI01000004_14041671_14073418 TNW, TNN coding downstream 467745 14041076 ~ 14073770 (-)
CI01000004_13720679_13777075 PAPPA2 coding downstream 764440 13720457 ~ 13777075 (-)
CI01000004_14557340_14560918 TRAC coding upstream 5929 14557281 ~ 14561042 (-)
CI01000004_14563131_14563558 NA coding upstream 10717 14562069 ~ 14563801 (-)
CI01000004_14569847_14571236 NA coding upstream 18454 14569806 ~ 14571496 (-)
CI01000004_14571792_14572305 NA coding upstream 20389 14571741 ~ 14572426 (-)
CI01000004_14574723_14575066 NA coding upstream 21929 14573281 ~ 14575066 (-)
G33650 NA non-coding downstream 13888 14527408 ~ 14527627 (-)
G33648 NA non-coding downstream 15376 14525935 ~ 14526139 (-)
G33638 NA non-coding downstream 19937 14521367 ~ 14521578 (-)
G33633 NA non-coding downstream 42057 14497445 ~ 14499458 (-)
G33627 NA non-coding downstream 48729 14488845 ~ 14492786 (-)
G33758 NA non-coding upstream 37246 14588598 ~ 14589028 (-)
CI01000004_14612987_14614652 NA non-coding upstream 61764 14612987 ~ 14614652 (-)
CI01000004_14618502_14618962 NA non-coding upstream 67301 14618156 ~ 14619037 (-)
G34461 NA non-coding upstream 136085 14687437 ~ 14693318 (-)
G32207 NA other downstream 2156735 12376168 ~ 12384780 (-)
G32150 NA other downstream 2760564 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 3128608 11406957 ~ 11412907 (-)
G31203 NA other downstream 3790874 10746437 ~ 10750641 (-)
G30316 NA other downstream 5134594 9377937 ~ 9406921 (-)
G33746 NA other upstream 17441 14568793 ~ 14569264 (-)
G33750 NA other upstream 27106 14578458 ~ 14579001 (-)
G33755 NA other upstream 30054 14581406 ~ 14581873 (-)
G33756 NA other upstream 33819 14585171 ~ 14585745 (-)
CI01000004_14591958_14594875 NA other upstream 43215 14591276 ~ 14594875 (-)

Expression


Co-expression Network