CI01000004_14389315_14396492 (NMNAT2)


Basic Information

Item Value
gene id CI01000004_14389315_14396492
gene name NMNAT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14389035 ~ 14396492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14389315_14396492.mRNA
GGCCTTGTCTCAAGCAGACATCGTCTCACCATGTGTCAGTTGGCAGTTCAGTCGTCTGATTGGATCAGAGTGGATCCTTGGGAGAGCTACCAGGACACTTGGCAGACCACCTGCAGTGTTTTGGAGCATCACCGAGACCTAATGAAAGTTAGTCCCAATTTCGGTCTGAATGCTAGAGTCACAGGATGCATTCTGTCCAATGTCAACACACCCTCCACAACCCCTGTGATTGGCCAGCCCCAAAATGGGACGTCTCCTATTTACCAAAACACAGCTAACAAGTCTGTGGCGATTAAGCTTTGGGGAAAGATGAGCGAAAGCCTGGGTAAAATTTGTTGTGTTCGCCCACACATGGATCGTTTTACCTTTGTTGATGAAAATGCCAACCTTGGTACAGCAATGCGCTACGAGGAAATTGAGTTGCGTATCCTGCTCCTTTGTGGCAGCGATCTTCTGGAATCTTTCTGTATCCCTGGCTTGTGGAACGAAAGTGATATGGAAGTGATTGTTGGAGATTTTGGGATAGTGGTGGTTCCTCGGGATGGAGTCGACACAGAAAGAATAATGAACCATTCATCTGTTCTCCGAAAGCATAAGGACAATATAATCGTGGTAAAGGATGAGATCGACCACCCGATGTCAGTCGTCAGTTCCACCAAGAGCAGACTGGCTCTTCAGCACGGTGACGGTCATGTGGTGGATTACCTGAGCCAGCCCGTCATTGACTACATCCTGCAGAGTCAGCTCTACATCAACGCTTCTGGATAGGGTGCGGAAGTCCACTTCCGACTCGTCAATCGTCCCTGTCTGTCTCTCTGTGTAATCTAGAGTATAATCCTCCTGTGCTACCACTGCTTTCCCATGTAGAGGAGCATTAATCTGTCCTCCCCTCTTACTCGTGTCTCATTGGGATGTACAGCACTGTGCCTGAGGGATCTGCTCCACCAATCAGCTTTAAGGGACTGGGTGGGCTTAGGTGCCCAATAGGAGGAAGAGGAATGAGCCTCGCCAACACCATGACAGAAAAAGAGAGTTTGATTGAATTAAA

Function

symbol description
nmnat2 Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be located in Golgi membrane; axon; and cytoplasmic vesicle membrane. Predicted to be active in Golgi apparatus. Is expressed in cranial ganglion; neurons; retina; retinal ganglion cell layer; and trigeminal placode. Orthologous to human NMNAT2 (nicotinamide nucleotide adenylyltransferase 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14389315_14396492.mRNA True 1048 mRNA 0.49 9 14389035 14396492

Neighbor

gene id symbol gene type direction distance location
CI01000004_14115087_14115790 TCTEX1D4 coding downstream 273245 14115005 ~ 14115790 (-)
CI01000004_14041671_14073418 TNW, TNN coding downstream 315265 14041076 ~ 14073770 (-)
CI01000004_13720679_13777075 PAPPA2 coding downstream 611960 13720457 ~ 13777075 (-)
CI01000004_13354130_13419831 BRINP2 coding downstream 969204 13354130 ~ 13419831 (-)
CI01000004_13208157_13210917 CENPL coding downstream 1178118 13207881 ~ 13210917 (-)
CI01000004_14425486_14425711 NA coding upstream 28872 14424179 ~ 14426902 (-)
CI01000004_14543631_14551256 NA coding upstream 145023 14541515 ~ 14551352 (-)
CI01000004_14557340_14560918 TRAC coding upstream 160789 14557281 ~ 14561042 (-)
CI01000004_14563131_14563558 NA coding upstream 165577 14562069 ~ 14563801 (-)
CI01000004_14569847_14571236 NA coding upstream 173314 14569806 ~ 14571496 (-)
G33445 NA non-coding downstream 2677 14384729 ~ 14386358 (-)
G33583 NA non-coding downstream 10496 14378267 ~ 14378539 (-)
G33581 NA non-coding downstream 13922 14370825 ~ 14375113 (-)
G33579 NA non-coding downstream 22629 14366154 ~ 14366406 (-)
G33443 NA non-coding downstream 33009 14351849 ~ 14356026 (-)
G33441 NA non-coding upstream 21434 14417926 ~ 14419034 (-)
G33622 NA non-coding upstream 89524 14486016 ~ 14489846 (-)
G33627 NA non-coding upstream 92353 14488845 ~ 14492786 (-)
G33633 NA non-coding upstream 100953 14497445 ~ 14499458 (-)
G32207 NA other downstream 2004255 12376168 ~ 12384780 (-)
G32150 NA other downstream 2608084 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 2976128 11406957 ~ 11412907 (-)
G31203 NA other downstream 3638394 10746437 ~ 10750641 (-)
G30316 NA other downstream 4982114 9377937 ~ 9406921 (-)
G33746 NA other upstream 172301 14568793 ~ 14569264 (-)
G33750 NA other upstream 181966 14578458 ~ 14579001 (-)
G33755 NA other upstream 184914 14581406 ~ 14581873 (-)
G33756 NA other upstream 188679 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016554 nmnat2 coding NC_007113.7 CM002886.2 36026183 ~ 36040820 (-)