CI01000004_14041671_14073418 (TNW, TNN)


Basic Information

Item Value
gene id CI01000004_14041671_14073418
gene name TNW, TNN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14041076 ~ 14073770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14041671_14073418.mRNA
ACGGGGATTACATCATTTAGTTAGAAAGGTTCTCTGCTCCCAGAAGCCCTTGTGGTTGTGGATGTGCAATTAATGGTTTTGATGGAATGTGCTTGGCAAACATATGGTCTGCCCAGTTCCTATACTGTAGGATCAGACATCTATAACACTGGCCTTGTAAAACAGACTTCGCTCCATTAAACATAATGTGATGTCTTGCGCATTGATTTTCATGTGTGTAGCATGCAAATCAAGCTCCTTACTGGAAGATGAGACCACAAACCATAAGGAAAGTTTGATATTTTGAGAAAGAAATGCTTGTAAATTCAACCACACAATCATCATAAGATTCTTTTGCTTTCTTTCAGAAACCATGATTGTTAGATTCAGCCGGCTGAAGAGAGGTCTCTTTCTTCTGGGGATGCTCTTTATGGTGTCCCATCTTGTGCTGTCCGAGGAGGTGCTTCCTGCAGAGAAAGAAGTCACATTCAGCCATGTCTACAGGATTGACTCGGGTTGTAAGCAGGGTTCTCAGGCGGGACAGCTGTCCCAGGACCAGGCCTCAGAAGGACAGTTAGTCACAGTGAATGGAGAGAATGACATTGTCTTCAAACACAACATACGTCTACAGTCGGCTGGTTGTGGATGTGCAGAATCGGAGGATTTCAAAGCTCTGTTGTACCGTGTAAATGGCTTGGAGGAGGAAGTCACCTACCTAAAGAGCCAGTGCGCTCAGGGCTGCTGCAGAGGAGGGTCAGGTGTGGACACCAGCTGCAGTGGGCATGGCACGTACCAGCATGACTCTTGCAGTTGTAAGTGTAACCCAGGCTGGGAGGGTCCAGACTGCTCCATCTCATCCTGCCCTGATGAATGCAATGATAACGGCCGCTGTGTTGACGGACGCTGCGTTTGCTATGAAGGCTACACCGGCCATGACTGCAGCCAGCTCACATGCCCCAACGACTGCAAAGATAAAGGCCACTGTGTGGATGGCAAATGTGTGTGCTTTAGTGGATTCTCAGGAGAAGACTGCAGTGTCGCGACCTGTCCGAATGACTGCATAGGTAATGGACGCTGCGTGGATGGACAGTGCATCTGCGATGAGGGATTCTTCGGAATCGACTGCTCCATGGTTCTAGGACCAAAAGGCCTCCGTCTGATCAAAGTCACAGATGTATCCCTGCTGGTGGAGTGGGAGTCTGTAAGAGGAGCCGAGTACTACATCCTGTCCTACTATCCAAAGGGAGACGAGGGAGCCATTGAAGAGGTCCAGGTGGAAAACACGAAAAACTCCTACCTAATCACAGGCCTCAGACCCGGAGTCACGTACATAGTACAGGTGTACGCTGTCATCAGGGGCATTAACAGTGAATCTGATGAGATAGTGGCTACAACCGAGGTCTCTGGTATTGAAGGAATAAAGGTGCTGGGCCAGACAGAGGACTCCATCCAAGTGGACTGGAAGAACCCTGCGATCGCTGTGGACTTCTTCAAATTGACCCATGCTAGCTCTGATGGTCAGGGAGGACAGGAGAACGTGGCAATGAGCCAGGAGGCCAGAACTAAGCACACCATTGTAGGCCTCAACCCAGGAACAGAATATCAGATAGGTGTACAAGCGATCAAAGGTGAAATTGAAGGCAAGCCATCGTACACCACAGGGGTCACAGACATTGATGCCCCAACCAATCTGGCAACCAGGGAGGTGACAGAGAACTCCGCAACTGTGACGTGGGATAGTGTACGTGCGGAAATCGATGGCTACATGCTGACTTACAGCTCTGCAGAGGGCACCAGCGGAGAAATTAAAGTGGGAGCAGACGCTACGTCTTACCAGCTGACCTCTCTGAAGCCAGGAGTCCTGTACACAGTTTTCCTCTGGGCCTATAAGGGCTCTCGTTCCAGTAGGAAGAGCATGACTGAGGCCGAGACGGACATAGATGCTCCTACTAACCTCATGACCAGGGAGGTGACAGAGGACTCCGCGTCGGTGACTTGGGACAAGGTGCAGGCTGACATTGATGGCTACATGCTGAGCTACAGCTCTGTAGATGGCTCTGGTCAGGAGGTCCGAGTAGGAGCTGACAGCACCTCCTACAGGTTCACTGTTCTGAAGCCTGGAGTTGTCTACACAGTCTATGTGTGGGCCATCAAGGGCCCTCGCTCCAGCAAAAAGAGCTCAACAGAAGCAGAAACAGATATAGATGCTCCTACTAACCTCTTAACCCGAGAGGTGAGCGAGGACTCAGTGTCGGTGACGTGGGACAAGGTGCAGGCTGACATTGATGGCTACATGCTGAGCTACAGCTCTAAAGACGGCTCTGGTCAGGAGGTCCGAGTAGGAGCTGACAGCACCTCCTACAGGTTCACTGGTCTGACGCCGGGAGTTCTCTACACAGTCTACGTCTGGGCTGTGAAAGGCTCTCGCTCAAGCAGAAAAGCCACAACTGAGGCTGAAACAGAGATTGATGCACCCAAGAATCTCAAAGCCATTGATGTTCAGACTGAAACCTCCACTATTACATGGAAAGCTCCTCAGGCTAATATTGATGGCTACATCCTGACCTACAGAGCTGAGGATGGCAGCATGCAGACTGTGGAAAAAACATTGACTGCTCGGGACAATAGATTTGCTCTTTCTGGCCTTGCAATGGGGAAGAAGTACATTGTCACCCTTATTGCCTACAGGGGCTCGAAGAGGAGTAGGGTAGTGGAGACAACATTTAGTACAGTGGGGATGGCCTACCCGTTCCCAATGGACTGCACTCAGATTATGAGGAATGGGAACATGGAGAGTGGCATCTATACAATCTACATCAATAACAACCGTAGCAGAACCATGCAGTATGAGGTGCGTTTCGATTTGGGCTTGGGATCAGAGCGGACATATGCCGTCTACGATAACTTCAAAGTAGCACCATCCAAACAGAAGTTTAAACTTACCATTGGCAACTACAAAGGAAACGCTGGTGATGCCATGACCTACCACCAGGGAGGGTCTTTCTCCACAGTTGATTCAGACAATGACATTGCGCTTGGTAACTGTGCTCTGACTCACCAAGGTGCCTGGTGGTACAAGAACTGCCACCTGGCCAATCTGAACGGCAGATTTGGGGATAACAGACACAGTATGGGGGTAAACTGGGAGCCATGGAAGGGGCACCTGCAGTCTCTTGACTTTGCAGAAATTAAGATCCGGCCAGTGGGAACAGCGGGCAGACAGAAGAGGTCACTGAAGAGGAGGGTAGCTGTGTATTAACAATCACTTGACAAAAACTACAAAATGTTATAATATAATCCAAAACTTGAGGGAATTGGATCAAACCAGGTTGAAATCTGTCTTCATATCAGGAAAGCCACTCTAGTTGTAGCCGCTGTAGATTATATGCTGTGTAACTGTATTTTGTATGTTACAAAAGGCAGATTTTGAATAGAACATGTTTTGAACATGCTTTACTTCAATTTAGTATATATACACACTGTATATGAAAGAAAACCAAAAAACAAAGCAAAATTTGTAGCATGACTGACATCACAGTGCCATTCCTAACTCAAAGTAAGTGAGGGTATATTGTATTATGATCTTCACAGAAGCTCTTTTTTATTTTATAACAGTGTTTTGCAACAAAGGACTTTGTACTGTATAATAATTTCTAAAGGTTTTAATGGATATTAATGATTTTTCCCCATCGTAATAGCTGACAGTTATGATTAAATTTAAATGTCATGCATAAAAAGACGTTTTATAACAGAGGTTAAGCTATAATGTCTTCCATCTGGATGTGTATTGTAGTTGTACTATAATTCCTGACACAGACACCAAATTAAGTGTCACATATTTTTACAGAAATAAA

Function

symbol description
tnn Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion and neuron projection extension. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

NR:

description
Tenw protein, partial

GO:      GO:0005578

KEGG:

id description
K06252 TN; tenascin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14041671_14073418.mRNA True 3833 mRNA 0.47 14 14041076 14073770

Neighbor

gene id symbol gene type direction distance location
CI01000004_13720679_13777075 PAPPA2 coding downstream 264001 13720457 ~ 13777075 (-)
CI01000004_13354130_13419831 BRINP2 coding downstream 621245 13354130 ~ 13419831 (-)
CI01000004_13208157_13210917 CENPL coding downstream 830159 13207881 ~ 13210917 (-)
CI01000004_13127356_13168751 EI2BG, EIF2B3 coding downstream 872325 13127356 ~ 13168751 (-)
CI01000004_13094468_13114401 PTCH2 coding downstream 926078 13093586 ~ 13114998 (-)
CI01000004_14115087_14115790 TCTEX1D4 coding upstream 41235 14115005 ~ 14115790 (-)
CI01000004_14389315_14396492 NMNAT2 coding upstream 315265 14389035 ~ 14396492 (-)
CI01000004_14425486_14425711 NA coding upstream 351594 14424179 ~ 14426902 (-)
CI01000004_14543631_14551256 NA coding upstream 467745 14541515 ~ 14551352 (-)
CI01000004_14557340_14560918 TRAC coding upstream 483511 14557281 ~ 14561042 (-)
G33402 NA non-coding downstream 8278 14030911 ~ 14032798 (-)
G33354 NA non-coding downstream 220347 13820464 ~ 13820729 (-)
G33351 NA non-coding downstream 222687 13818038 ~ 13818389 (-)
G33350 NA non-coding downstream 224040 13816790 ~ 13817036 (-)
G33305 NA non-coding downstream 243151 13796724 ~ 13797925 (-)
G33468 NA non-coding upstream 23479 14097249 ~ 14097451 (-)
G33470 NA non-coding upstream 24548 14098318 ~ 14098546 (-)
G33473 NA non-coding upstream 51396 14125166 ~ 14125387 (-)
G33477 NA non-coding upstream 58523 14132293 ~ 14132511 (-)
G33480 NA non-coding upstream 69218 14142988 ~ 14143249 (-)
G32207 NA other downstream 1656296 12376168 ~ 12384780 (-)
G32150 NA other downstream 2260125 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 2628169 11406957 ~ 11412907 (-)
G31203 NA other downstream 3290435 10746437 ~ 10750641 (-)
G30316 NA other downstream 4634155 9377937 ~ 9406921 (-)
G33746 NA other upstream 495023 14568793 ~ 14569264 (-)
G33750 NA other upstream 504688 14578458 ~ 14579001 (-)
G33755 NA other upstream 507636 14581406 ~ 14581873 (-)
G33756 NA other upstream 511401 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location