CI01000004_14115087_14115790 (TCTEX1D4)


Basic Information

Item Value
gene id CI01000004_14115087_14115790
gene name TCTEX1D4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14115005 ~ 14115790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14115087_14115790.mRNA
ATTTCTTCATCATGGCCAATCAGCCTCTACCTCTGTCACAGGAGACTTTAGCTCAGTTCAATCACTCCCTGGCCACAGAACCAGGTGCCTTAGGGCCTCCGAGGCGACGTCTGGGCTCCATCTCCACCCGCCGAAGCTCCAAAGACCAATCCAAGGACCAGCCCCACCACAGACCCCTGTTCCTCAGAGGCATGACGTGTCTCTCGTCAGAGTCATCGTTCCTGAGCCCCAACGTCAGCGCTTCCCACATCTCCATCGGCAAGCGGTTCTCATTCGCCGGCTGGCACCAGGGAGGAAGAGTGAGCTTCTCTGGACTCTACCTTCACCAACCCATTCAAGAGGTCTATGTGGAGAACACCTACAGAATGGGACCAGAACCAGGGTGCCACTTCAGCGCCAGCAGGACCCAGCAGATCTTACAGGCCACTTTGGATAGTTATTTGGAAGGTGTGAGTTACAGTCCTGACAGTTGTAGCCAGCTGTGTCAGATGGTAGCGGATCTAGTTCTCAGTAAGCTAAAAGATGTCAATCCGCCACGATACAAACTCGTGTGCCAGGTGGTGGTCGGGCAGAACGGTAAACAAGGTATAAGGGTGGCGAGCCGTAGCCTGATCAACCCCAACACTGACAACTACACATCTGCTGTTTTCCAAAATCCCTCGCTGTTTGCTGTGGCTATAGTACACGGCATGTACTTTGAATGAAAGTTAAATCAACCGCCCTTATTATGCGTGTACAAAATGCATACCTTTAAAACAAATCCATTTAAAAATTCAAAGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14115087_14115790.mRNA True 786 mRNA 0.51 1 14115005 14115790

Neighbor

gene id symbol gene type direction distance location
CI01000004_14041671_14073418 TNW, TNN coding downstream 41235 14041076 ~ 14073770 (-)
CI01000004_13720679_13777075 PAPPA2 coding downstream 337930 13720457 ~ 13777075 (-)
CI01000004_13354130_13419831 BRINP2 coding downstream 695174 13354130 ~ 13419831 (-)
CI01000004_13208157_13210917 CENPL coding downstream 904088 13207881 ~ 13210917 (-)
CI01000004_13127356_13168751 EI2BG, EIF2B3 coding downstream 946254 13127356 ~ 13168751 (-)
CI01000004_14389315_14396492 NMNAT2 coding upstream 273245 14389035 ~ 14396492 (-)
CI01000004_14425486_14425711 NA coding upstream 309574 14424179 ~ 14426902 (-)
CI01000004_14543631_14551256 NA coding upstream 425725 14541515 ~ 14551352 (-)
CI01000004_14557340_14560918 TRAC coding upstream 441491 14557281 ~ 14561042 (-)
CI01000004_14563131_14563558 NA coding upstream 446279 14562069 ~ 14563801 (-)
G33470 NA non-coding downstream 16459 14098318 ~ 14098546 (-)
G33468 NA non-coding downstream 17554 14097249 ~ 14097451 (-)
G33402 NA non-coding downstream 82207 14030911 ~ 14032798 (-)
G33354 NA non-coding downstream 294276 13820464 ~ 13820729 (-)
G33351 NA non-coding downstream 296616 13818038 ~ 13818389 (-)
G33473 NA non-coding upstream 9376 14125166 ~ 14125387 (-)
G33477 NA non-coding upstream 16503 14132293 ~ 14132511 (-)
G33480 NA non-coding upstream 27198 14142988 ~ 14143249 (-)
G33549 NA non-coding upstream 149947 14265737 ~ 14266188 (-)
G33443 NA non-coding upstream 236059 14351849 ~ 14356026 (-)
G32207 NA other downstream 1730225 12376168 ~ 12384780 (-)
G32150 NA other downstream 2334054 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 2702098 11406957 ~ 11412907 (-)
G31203 NA other downstream 3364364 10746437 ~ 10750641 (-)
G30316 NA other downstream 4708084 9377937 ~ 9406921 (-)
G33746 NA other upstream 453003 14568793 ~ 14569264 (-)
G33750 NA other upstream 462668 14578458 ~ 14579001 (-)
G33755 NA other upstream 465616 14581406 ~ 14581873 (-)
G33756 NA other upstream 469381 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016552 NA non-coding NC_007113.7 CM002886.2 35615395 ~ 35621867 (-)