CI01000004_13354130_13419831 (BRINP2)


Basic Information

Item Value
gene id CI01000004_13354130_13419831
gene name BRINP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13354130 ~ 13419831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13354130_13419831.mRNA
TGGCGCCAGGTGCCCAGGGGCAGGATGGCGTTGTGTTGGCAGAGAGCTGCAGTTGTTAGATGGTTCCTCTTGATGCTCCTGTGGCACTGGGCACCTCTGGGCCCACTGAGCTGGTTTCTGGCTCTGGCTGAGCGTCTGGACCAGAAGACCTCACCGTTTTCTTCCATCTCCGGCCGGAGCAGCGGCCAGCTGGACTGGCTCCTGTCTGATAAAGGGCCCTTCCATCGCTGTCCAGAATACACCGAGTTCAAAGAACGCTTCCAGCAAGGCTTCTCCACACGCTATAAAATCTACAGGGAGTTTAGTCACTGGAAAGTCAACAGCTTGGTGACAGAGAAGAGAGACTTCTTCAAAGCCCCGCTGCCTTTGGCGCCCGAGTTTTTACGCAACCTCAGGCTTCTGGGGAGAAGGCCGAGCCTTCAGCAGATTCATGAAAATCTGATCAAGAAATATGGCACTCATTTCTTGGTATCAGCCACATTGGGAGGGGAGGAATCACTCACGATCTTCTTGGACAAACAGAAGCTGAGCAAAAAGTCAGAGGGCAACGGAAACAGCTCCGTGGTCTCCCTAGAAATCTTGCACCAGTTGGCGGCGTCATACTTCACAGACAGAGAGAGCACCCTGCGAAGACTCCACCACCTGCAGATCGCTACATCTGCCATCAAGGTAACAGAGACCAGAACGGGGCCTCTTGGATGCAGTAACTACGACAGCCTGGATTCCGTCAGCTCTGTCTTAGTGCACAGCCCAGAAAATAAAATCCATCTGAAAGGTATGACAGCAGATGTGCTTCCTGAGTTTCTGCGGAATCGTTTTGTGGAGGCGGCGCTCAGTTACGTGGCGTGTAATTCAGAGGGCGAGCTACTGTGCCGCAACAATGACTGCTGGTGCCGCTGCTCCGCAAAGTTCCCTGATTGTAACTGCCCCTTTGCAGACATCAAAGCTATGGAGGAGAGTCTGCGTAAGAGCAAAGAGTCCTGGGTCAACCTCAACAATGACTTCATGGAGTCAGATGAGTTCAAGGCCTTTCTCAAGAAATTGCCAACAGATCATTTTTTAAACACCTCTGCCGTCTTAAAGTTCTGGACATCAGATCTGGTCCTGCAGAGACGTTATGGTCTGCTGGAGGCGAGCACTAAAGTGGTGCTGGGAAAAGCCATCAAGATAGTGCGCAAACTCTTCGCTCTCAGCAAGCGCTGTCCCACACAGCCAAAGATCAGCCTGCCTAGAGAAAGGACTCTGGGTTTTTGGCTCAACAAAGCCCAGTCTCTGTTGTACTGCAGCGAGCATGGTGTGCACGGCACCTTCTCTGAAGAACTGCAGGGCTGCATCTGCGCCGCAGAGCAACGCGCTGTCTGCCAGGGCACCGTGCCATGTAGGGTGGGTGAGGGGACCCTCTGCTCATCCTGCGCCCCGGACAACATCACCCGCTGTGGCACATGCCTCCCAGGCAGCATCCTCCATATGGGCTTCTGCCGCCCCAACATCGCCAACTCTTTGGACCACTACGTCAACTTTGACTTTGACATGCCGGACGCAGAGATGCGTTACCTCCTCCAAAGGCTCGATAGCCGCATGGAGGTCCACGCCATCTACATCAGCAACGACGTGCGCCTAGGCAGCTGGTTCAACCCGGCGTGGAGGAAGCGCATGCTGCTCACCCTCAAGAGCAACAAGAACAAGTCCAACCTCATCCACATGCTGATGGGGATCTCTTTCCAGATCTGTTCCACCAAGAACAGCACGCTGGAACCCGTGCCTGCTATCTATGTCAACCCCTTCGGGGGCAGCCACTCGGAGAGCTGGTTTATGCCAGTCAACCAGCAGGACTTCCCAGACTGGGAAAGAACTAAATTGGATGCCTCACTCCAGTGCTACAACTGGACCCTCGCTCTTGGCAGCAAATGGAAGTCCTTCTTCGAAACGGTGCACATCTACCTGCGCAGTCGCATCATCACTGACGATCCTTCCGTCAACGAGACGCTTTTTTACGAGCCGCTGGACCTGGATGACCACTCGGCCAACCTGGGCTACATGAAAATCAACAGTCTGAAGGTCTTTGGCTACAGCATGCACTTTGATCCAGAGGGGATCAAGGACCTGATCCTGCAGCTGGACTACCCGTACACGCAGGGATCCCAGGATGCGGCCTTCCTGATGCTTCTGGAGATGAGGGACCGCATCAACCGGCTCTCTCCGCCGGGAGCCCAGCCGCTGGACCTCTTCTCCTGCCTGCTGAGGCACAGGCTCAAGCTTTCGTCCAGCGAGGTGGTGCGCATACGGGAAGCGCTCCAGAGTTTTAACGCCAAGCTCCCCAACTCCACAGAGCCAGAACTCAGCCAGCTGTGCAGC

Function

symbol description
brinp2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

GO:

id name namespace
GO:0045930 negative regulation of mitotic cell cycle biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13354130_13419831.mRNA True 2355 mRNA 0.55 7 13354130 13419831

Neighbor

gene id symbol gene type direction distance location
CI01000004_13208157_13210917 CENPL coding downstream 143213 13207881 ~ 13210917 (-)
CI01000004_13127356_13168751 EI2BG, EIF2B3 coding downstream 185379 13127356 ~ 13168751 (-)
CI01000004_13094468_13114401 PTCH2 coding downstream 239132 13093586 ~ 13114998 (-)
CI01000004_13089864_13091636 NA coding downstream 262461 13088583 ~ 13091669 (-)
CI01000004_13086552_13088659 NA coding downstream 265232 13084824 ~ 13088898 (-)
CI01000004_13720679_13777075 PAPPA2 coding upstream 300626 13720457 ~ 13777075 (-)
CI01000004_14041671_14073418 TNW, TNN coding upstream 621245 14041076 ~ 14073770 (-)
CI01000004_14115087_14115790 TCTEX1D4 coding upstream 695174 14115005 ~ 14115790 (-)
CI01000004_14389315_14396492 NMNAT2 coding upstream 969204 14389035 ~ 14396492 (-)
CI01000004_14425486_14425711 NA coding upstream 1005533 14424179 ~ 14426902 (-)
G32917 NA non-coding downstream 52725 13301028 ~ 13301405 (-)
G32882 NA non-coding downstream 113388 13240506 ~ 13240742 (-)
G32880 NA non-coding downstream 114458 13239339 ~ 13239672 (-)
G32868 NA non-coding downstream 117998 13235668 ~ 13236132 (-)
G32867 NA non-coding downstream 119469 13234436 ~ 13234661 (-)
G33195 NA non-coding upstream 6655 13426486 ~ 13445538 (-)
G33217 NA non-coding upstream 252278 13672109 ~ 13699995 (-)
G33305 NA non-coding upstream 376893 13796724 ~ 13797925 (-)
G33350 NA non-coding upstream 396959 13816790 ~ 13817036 (-)
G33351 NA non-coding upstream 398207 13818038 ~ 13818389 (-)
G32207 NA other downstream 969350 12376168 ~ 12384780 (-)
G32150 NA other downstream 1573179 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 1941223 11406957 ~ 11412907 (-)
G31203 NA other downstream 2603489 10746437 ~ 10750641 (-)
G30316 NA other downstream 3947209 9377937 ~ 9406921 (-)
CI01000004_14543631_14551256 NA other upstream 1130969 14541515 ~ 14551352 (-)
G33746 NA other upstream 1148962 14568793 ~ 14569264 (-)
G33750 NA other upstream 1158627 14578458 ~ 14579001 (-)
G33755 NA other upstream 1161575 14581406 ~ 14581873 (-)
G33756 NA other upstream 1165340 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016549 brinp2 coding NC_007113.7 CM002886.2 34380982 ~ 34555945 (-)