Gene
RNA
| Item | Value |
|---|---|
| gene id | G32150 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 11776519 ~ 11780951 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU36452 | False | 410 | lncRNA | 0.44 | 2 | 11776519 | 11777089 |
| TU36455 | True | 583 | TUCP | 0.46 | 3 | 11776519 | 11780951 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_11768937_11770193 | NA | coding | downstream | 6091 | 11768641 ~ 11770428 (-) |
| CI01000004_11731995_11744636 | FAM134B | coding | downstream | 31883 | 11731852 ~ 11744636 (-) |
| CI01000004_11720195_11723994 | AND2 | coding | downstream | 52525 | 11719788 ~ 11723994 (-) |
| CI01000004_11695427_11698763 | NA | coding | downstream | 77756 | 11694520 ~ 11698763 (-) |
| CI01000004_11681649_11693474 | LRRCC1 | coding | downstream | 83045 | 11681457 ~ 11693474 (-) |
| CI01000004_11789063_11823381 | NA | coding | upstream | 11407 | 11788496 ~ 11824740 (-) |
| CI01000004_11826038_11848540 | AMPH | coding | upstream | 47818 | 11824907 ~ 11848540 (-) |
| CI01000004_11930044_11933982 | NA | coding | upstream | 152751 | 11929840 ~ 11934156 (-) |
| CI01000004_11944095_11946749 | NA | coding | upstream | 166696 | 11943785 ~ 11947016 (-) |
| CI01000004_11974708_11980518 | NA | coding | upstream | 197555 | 11974644 ~ 11982295 (-) |
| G32071 | NA | non-coding | downstream | 2750 | 11771029 ~ 11773769 (-) |
| G32147 | NA | non-coding | downstream | 27715 | 11748523 ~ 11748804 (-) |
| G32145 | NA | non-coding | downstream | 48636 | 11727615 ~ 11727883 (-) |
| G32143 | NA | non-coding | downstream | 50444 | 11725774 ~ 11726075 (-) |
| G32137 | NA | non-coding | downstream | 68269 | 11707737 ~ 11708250 (-) |
| G32154 | NA | non-coding | upstream | 5159 | 11782248 ~ 11783549 (-) |
| G32163 | NA | non-coding | upstream | 65563 | 11842652 ~ 11844262 (-) |
| G32174 | NA | non-coding | upstream | 115643 | 11892732 ~ 11892973 (-) |
| G32195 | NA | non-coding | upstream | 123034 | 11900123 ~ 11907428 (-) |
| G32222 | NA | non-coding | upstream | 170574 | 11947663 ~ 11947956 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | downstream | 363612 | 11406957 ~ 11412907 (-) |
| G31203 | NA | other | downstream | 1025878 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 2369598 | 9377937 ~ 9406921 (-) |
| G29746 | NA | other | downstream | 3418392 | 8354498 ~ 8358127 (-) |
| G29656 | NA | other | downstream | 3811019 | 7964364 ~ 7965500 (-) |
| G32207 | NA | other | upstream | 599079 | 12376168 ~ 12384780 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 2773711 | 14541515 ~ 14551352 (-) |
| G33746 | NA | other | upstream | 2791704 | 14568793 ~ 14569264 (-) |
| G33750 | NA | other | upstream | 2801369 | 14578458 ~ 14579001 (-) |
| G33755 | NA | other | upstream | 2804317 | 14581406 ~ 14581873 (-) |
