CI01000004_11789063_11823381


Basic Information

Item Value
gene id CI01000004_11789063_11823381
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11788496 ~ 11824740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11789063_11823381.mRNA
AATTTTTAATTTTGTTTGTAATGACAACCAACTAACGCAAGGGGGAGACATTTGTCTTTTTCCAGCAGTGTATGTGTGCGTGTGTGCGCGCGCGCGTGTAGTGTAGTGTCTGCGGAGAGCTTTTAGAATGGTACAAAACCTATAGAAATTAAACGACTGGTTTAAACAGTTTAAGCTCTAAAATCACAGGCAATATCCATTTTAAGCGTTTACCAGAAATTAAAAGTAGATAAGCTATACCTCGATATGCTTCAGCAGGTTGGATGGAGAGTTCTAGTAGGCTGTGATGTGGTTTGTTTTTGGTAAACAAAGCAAACATTTAAAAAGAAAAGAATCTTTACTCTTTTTTAAAAACTAGAACATACTAAGTATGGCCATGGATGTGGATCTATCTTCGTCCATTTTGCCGCCAATTGTTTAGTCTTCAAAAAAATTGATGGGAAATCGCCGAACTTCATGACACATGACCCTACAAGAGTGATTACTGATAGGCTGTCTGTCACCTGCAAAAACCAATCACGTTTTAGAGAAGAAAAATCATCTCCTGACTAACCTAACTACTTGACAGAAATGTAGTGGAGTAAAAGTAGGCTATGATATTTGTCTTTCAATGTAGTGAAGTTAAATTAAGAGAAAAAAAAAATCTCAAGTAAAGTACAGATACTCAAAAAGTGTAGGCCTACTTAAGTACAGTACAGTACTCAAGTAAATGTAGGCTACTTCGTTACTGTCCACCTCTGAAAAATCAATGTGGACACTTTCTGGACGTTAGTATTGAATTATGTTAATACTGGCCTGTACAAAACATCTGGCCCATCAGTTTTATCGGTAGGTTCAATATTTTTTTATTCAGCTCTCTTGTTCTTCCACAGAGTTATATCAACCTATAAAATTTTAATTGATTAAAATAACTTTAAAGTCCCCCTGTAGTCAATAATTTTATCCCTTAAAACTCATCTTTGATCACAAAAATGACATATTTAAATGTTCTTCCTATGAAAAAATGTATTTCATGCCTTACAGCTTAAATGTAACTCTTCACCCTTGCTTCATTTAGTATACGCAGATCTATGAATATGCTAATTAGCCCTGCCTCCATTCACTTGCACAAGCTCAGAGATCCACTCAGTCAACTTACTGAGGTAAACGCTGCACAATGGTATCATTTTTTACAACGTCAGACACATAACGTTAATTAATATGATTAGTCTTTTCCTTTACTACATTATTGAACAGCTAATAATGTGTTGCTAATGTTATACAAACCACGTCCCTGTTCTTCATCTCAGAGTCAGACAGCTGTCTTCTAAAAATCAGCATCCTTAGAAATGCTCAGAACTTCGGTGGAGAAAGGCATGAATGATGTTTTTATACATTTATATTGTCCTCCTCTTAAAGATGCCAGCAGTTCTGGGAGTGAGTTTGGATTCAAATCCAAAGGCTTTGGTTAAGGCAGAGGGCAAAACCGTGTATCTGCCCTGCAAAGCGATGGGTCAGAGCTCTGCACATTATATCCACTGGTACCAAATAAAAGATGGTGAAGCCCCGTCAAGGCTACTCTATGTCAGTACAATTGGTAGTGTCATTCGTGATAGCAACAATCCCCAAGCAAATGACTTCACAGTGGACAAAACAAAGCTCTATGATCTACAACTGAGGAAAGAGGGGAAGCCTCTTAAAGTTGGTGTTGGTGTGACAGTGCAGACAGTGGTGGCCGCGATTTCACAGAGAGTTGTCAAAAACAGTACAGGAGCTGTGTACAACATAAAACAGAGCATTAGGCCTATACTCTCCCACTTTTCAACTAGAATGATGATTGTGTACATTTATATTGTCCTTCTCTCAGAGATCCCAGCTGTTCTGGGAGTGACTTTGGAACAAGGTCAACAGACGTTGGTCAAAGCAGTGGGCAAAATTTCATATCTCCCCTGCAAAGTGACCGATTTGCAGTCTTGGAATTATATCCATTGGTACCAAAAGAGAGAGGGTGAAGCTCCATCAAGACTACTGTATATCAATGCAGGCGGTAGCTTCACTCATGATACCAACAATCCCCAAGCAAATGACTTCACTGTGGACAAAACACAGCTCTACAATCTAAAACTGAGCAACACAAAGCCGATTCATGCTGCAGTTTACTACTGCGCCTACTGGGACACGAGCAACCACACAGTTCTGGGAGTGAGTTTGGATCAAGGTCCAAAGGCTTTGGTTAAAGCAGAGGGCAAAACCGTGTATCTGCCCTGCAAAGTGAGCTCTTCAAATTATATCCACTGGTACCAAATGAAAGATGGTAAAGCCCCGTCAAGACTGCTCTATATCAGTGATGGTGGTGGTAGTGTCACTCGTGATAGCAACAATCCCCAAGCAAACGACTTCACGGTGGACAAAACAAAGCTGTATGATCTAAAACTGAGTGACATTAAGAAGAGTCACGCTGCCGTTTACTTCTGCGCCTACTGGGAGTATGTCTCAGGCTACGGCCACAGTTGTTTAAATGGACAAAATATTCCTACGCATCCTGACCGTGTGATGATTAAGACAAAGGGTAGAACTGCTGTAATCACATGCCAGGTGGATTCATCGACACTTCAGTCCAACCCTCTCCACTGGTACAGAGCTCAGTCAGGGGGAGCTTTCCAACGATTAATATATTTCGATGCTGGATCGAAAATAGCCAAAATCGATGGGGATAATAAGAAAAAATATGCTGGATCGGTGAGAAATGACCAAGTGTCACTGACTATCTCAACACTGACGCTCCAAGATACAGGATCATATTACTGCGCGCTCTATACTGGAGACAACACAGTGCTAACTGTTTTGGTGAAGGTAAAGGGTAAAACTGTGTCCTTCAGATGTGAAGTCACTGGCTTGGGCTCTAGTAACTATGTTCACTGGTATAAGAAAGTCGGTGGAACGTTTAAAAGACTACTGTACATCAGTCAGTCTGGGGTTGCTACAAGTGAAGCAAAAGAAATTGTCGCTGAAAAAAATGGAAATTCATATGGCATAAAACTCAAAGAAATAAAGGAGGATCATGCTGGCATGTATTACTGTGCATGCTGGGAGAGCGGCCACAATTGTTTAAATGGACAAAGTATTCCTAGGCATCCTGACCGTGTGATGATTAAGACGAAGGGTAGAGCTGCCACAATCTCATGCCAGGTGGATTCATCGACGCTTCAGTCCAGCGCTCTCCACTGGTACAGAGCTCAGTCAGGGGGAGCTTTCCAACGATTAATGTATTTCGAAGCTGGATCGACAAAACCCATAAACGATCAGGATACCCCTCGTAGATATGCTGGATCAGTGAGTAAGCAAAAGCAAGTTATGTCACTGACTATCTCAAAACTGACGCTCCAAGACGCAGGATCATATTACTGCGCGCTCTGGACTGACAGCAACACAGTGCTAACTACGTTGGTCAAAGCAGTGGGCAAAATTTCATATCTCCCCTGCAAAGTGACCGAATTGCAGTCTTGGAATTATATCCATTGGTACCAAAAGAGAGAGGGTGAAGCTCCATCAAGACTACTGTATATCAATGCAGGCGGTAGCTTCACTCATGATACCAACAATCCCCAAGCAAATGACTTCACTGTGGACAAAACACAGCTCTACAATCTAAAACTGAGCAACACAAAGCCGATTCATGCTGCAGTTTACTACTGCGCCTACTGGGACACGAGCAACCACAGTGTGGAAGGTGTGAGTTTAAAACAACCTCAAAAGGTTTTGGTGAAGGTAAAGGGTAAAACTGTGTCCTTCGGCTGTGAGGTCACTGACTTGAGCTCTGGCTATGTTCACTGGTATCATAAGAAAGTCGGTGGAACGTTTAAAAGACTACTGTACATGAGTGAGTCTGGGGTTGCTACAAGTGAAGCAAAAGAATTTGTCGCTGAAAAAAAAGGAAATTCGTATGGCATAAAACTCAAAGAAATAAAGGAGGATCATGCTGGCATGTATTACTGTGCAAGCTGGGATGGCAGCCACATGGATGGAGCCGGTGAGCTGCAACAGAAAATCTCATTGACCAAAGCAGAGGAAAAGTTAGCCATTATAGACTGTCAATTCACTTCAAATTGCTTGTACTACATCCACTGGTATCAGCAAAAAGAAGGAGAACCCTTAAAGAGGATAATATATGCTGACATAAATGATGGATCCGCAAAAAATGATGCTGGTTTTGAGTCTATAAAATCAGAAAAGAAAGCTTCATATCATTTTGTTTTGAAAATCACCAAGCTGAAAAAAGAGCATTCAGCAATGTATTACTGTGCTTGCTGGATCTCAGGCAGCACAAAAAAATACCACATTGTGTGTCAATCAGATTCATTACCAATATTTTTGTACATTAGCGTATTGTTAGAGAAAAATCGTATAATTGATGGAAACGTGAAGTTGCAACAGAAAATCTCATCGACCAAATCTGTGGACAAGACAGCTGTTATAGACTGTCATTATCCTTCAGACTGCAGTGGCTACATTCACTGGTATCAACTAAAAGAGGGAAAAACCTTAAAAAGAATACTATATTCATCAATCTCTGATGGAAGCACTTACAATGATGCTGGTTTTGAACAGTTTAAAGTAAATAAGAAAGAGTCAAATCTGGCTCTGAAAATATCTGAACTAAAAAAAGAGCATTCAGCGATGTATTACTGTGCCTGCTGGGTGTCAGGCGGCACAGTAGTTATAAATACTGAAACCCTGCACAAAAACTCAGCAGGGACTTGTAAACAAACTATTGCAGCCCCTACTGACCCAGGGAAAGACAAGATCAATCCACCAACGGTATCAGCATACCTATCAAGAAAAACAAGTGACAAACAGACAATGTTATGCCATGCCAAAGATATGTTTCCTGACTTGGTGACATTCACCTGGAAAAAGAAGAGCAATACAGGAAATTGGACGGATGTATCGGAGGAAGTCATGGAGCAGAGTAATTCTGAAAATTCAAAAGTCACCTCCGTGACAAGTATGATGATTGTAGATGAAAACACGGCTAGAGGCAATCTCTACAAATGTGTTGCTAACCATGAAGGAGGCTCGTCTGAGGAAATTGAACTGAAGAAAAATAACAAACACACACCAAAGAAACCGGATAAGCCGGACCTAACATGCCCAACCAACACTGGTGACACTGTGAAGACCTTAAAACAGCAGAGATCAGGCAATTCGGAGCAAATGCCCAGTCTGTACCTGTTTGTCTACGCGTATGGTGTCATGCTTATGAAGAACGGAATATATTTTTGTGCCGTCTCTATCTTTCTATTAAAGAGAAAATTTGGAAAGAAAGAATAAAGCTTCTCTATAGAGACTAAATGGATAAGATAAACATCAAGCAAACAAACATTTATCATATAGAGTATGTTTAGCTGATTTCTAAAGAATAGAAGCATATCTGCAGCTATATTAACTTTGCTTAAATGTATTGTTTTTAAATGTATTTGTTGTAGATCTGCTTTGCACAACTGGGTAAACTTTACAATAAGGTTCATTAGTTAACATGAACTAATAATGAACTGCACTTATGCAGCATTTATTAATCTTTTAATAATAATCATTTACTAAAAATCTTGTTAACATTAGTTAATGCACTGTGAACTAACATGAACAAACAATGAACGACTGTATTTTCATTAACATTAATGAAGATTAGTAAATACTGTACCAAATGCATTGTTCATGGTTAGTTCATGTTAGTTAATACATTAATTAATGTTAACGAATGAGTGCTTATTGTAAAGTGTTACACACAACTGTTTTATTTTTTCATCTTTGAATTTTTTTTTTAAAGTGTATAATATACCAACATTTTAAAATGTTTTGTATCTGTCTTTGTGGCATTCTCTGAATTTGTTAAATAAA

Function

NR:

description
T-cell receptor gamma, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11789063_11823381.mRNA True 5877 mRNA 0.39 17 11788496 11824740

Neighbor

gene id symbol gene type direction distance location
CI01000004_11768937_11770193 NA coding downstream 18068 11768641 ~ 11770428 (-)
CI01000004_11731995_11744636 FAM134B coding downstream 43860 11731852 ~ 11744636 (-)
CI01000004_11720195_11723994 AND2 coding downstream 64502 11719788 ~ 11723994 (-)
CI01000004_11695427_11698763 NA coding downstream 89733 11694520 ~ 11698763 (-)
CI01000004_11681649_11693474 LRRCC1 coding downstream 95022 11681457 ~ 11693474 (-)
CI01000004_11826038_11848540 AMPH coding upstream 167 11824907 ~ 11848540 (-)
CI01000004_11930044_11933982 NA coding upstream 105100 11929840 ~ 11934156 (-)
CI01000004_11944095_11946749 NA coding upstream 119045 11943785 ~ 11947016 (-)
CI01000004_11974708_11980518 NA coding upstream 149904 11974644 ~ 11982295 (-)
CI01000004_12025107_12032154 NA coding upstream 200367 12025107 ~ 12032952 (-)
G32154 NA non-coding downstream 4947 11782248 ~ 11783549 (-)
G32150 NA non-coding downstream 11407 11776519 ~ 11780951 (-)
G32071 NA non-coding downstream 14727 11771029 ~ 11773769 (-)
G32147 NA non-coding downstream 39692 11748523 ~ 11748804 (-)
G32145 NA non-coding downstream 60613 11727615 ~ 11727883 (-)
G32163 NA non-coding upstream 17912 11842652 ~ 11844262 (-)
G32174 NA non-coding upstream 67992 11892732 ~ 11892973 (-)
G32195 NA non-coding upstream 75383 11900123 ~ 11907428 (-)
G32222 NA non-coding upstream 122923 11947663 ~ 11947956 (-)
G32224 NA non-coding upstream 126251 11950991 ~ 11951304 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 375589 11406957 ~ 11412907 (-)
G31203 NA other downstream 1037855 10746437 ~ 10750641 (-)
G30316 NA other downstream 2381575 9377937 ~ 9406921 (-)
G29746 NA other downstream 3430369 8354498 ~ 8358127 (-)
G32207 NA other upstream 551428 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2726060 14541515 ~ 14551352 (-)
G33746 NA other upstream 2744053 14568793 ~ 14569264 (-)
G33750 NA other upstream 2753718 14578458 ~ 14579001 (-)
G33755 NA other upstream 2756666 14581406 ~ 14581873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016502 BX323064.1 non-coding NC_007113.7 CM002886.2 31874398 ~ 31874836 (-)