G32071


Basic Information

Item Value
gene id G32071
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11771029 ~ 11773769 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36370
CTTCAACGGCTATAAACAAAATAAACTGTAAGCATCCACACTGTAAACCTAAATAAAATAATAAGTAGATGAACAAAATATTAACTGTAAAACAAAACAGTAAGTACTACATTAATCCACTCTGGATCAGCAAAACTCATAGTTTGCCAAAAATATAGCATATTAAAAACGAGGCTTCAATAATATGTGAGGCACAGTTCACACTGTAAATCAACAAGGACTAGTGAACTTAAAACTGACATTCTTGGTTTATTTCAAAGCTGATTATATTTAATAGTACCTGCACTAATGTCATGTGCTCTTTGTCATTGCAATATCAGTTATTTAGAAGCTGTTACTGTATTATGGGTATGTGATGAGCAGAGATGAGTGAGGTATTCAGCAGTCAGATGTCATCTTCTCGGACAGTGCTGACTGGCAGGTGCTGGGTGGGTTGAACACCCCAGGGTCACTAATGCCCAGCTGAAGGTCAAAGAAGCGGGTGGACGTGGTCACGCTACTGTTCTTTGTGTATGTCTCCTGCACAGGATAGCAGTCCTTCAAAGTGTACACACCAACCCAAGCTTCATTTTTGCGAGCCGGTTTTCGATCAGACCATTCTTGAACTTCGATCATGTCTCCAGGTCCTCCAATGAAGTACTGGTCCTCATATGTGGAGTTCAGGGGTATGTCATAAGGGTCCCAGGCCTCCGTCAGAGCGATCTTTGCACACTGCTTGGTAATTTCCTCAATCTGGAAAAGCACTCCACTCTTGAACAAGTAGATGTACTCAAAGAACTTTTTACAAGGTGTGTGTCCTGTCTTCTGCTCCAGAACCCTAATTCGCTGATTCTGTGCATCATAGGTGACCGATGCCCGTGTGTTTCGTCCCGTGCCGTGGTCATATTGAACGGTCCGACCCTCCCACTGCAACGGCGCGAGACAGGGCTGAGGCGATGCCGCTACTGACGGTGGAGAGCCCAGACAGGGCACTATCGCGGACAATGACAATACTAGCGCAAAAACAACAAAGCCTGGCATGTCTGTTGGTGCAAAGCGATATTTACATGAAAATTAAATATTGACAGAACGATTCGAATGCCTTTAAGCGGAGTATTGTTTTTTTAGCCAGTGCTTGCGCTGGTGTATAATCCACACAATGACAAAATACACCAGCAGCAGCATCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU36370 True 1167 lncRNA 0.44 3 11771029 11773769

Neighbor

gene id symbol gene type direction distance location
CI01000004_11768937_11770193 NA coding downstream 601 11768641 ~ 11770428 (-)
CI01000004_11731995_11744636 FAM134B coding downstream 26393 11731852 ~ 11744636 (-)
CI01000004_11720195_11723994 AND2 coding downstream 47035 11719788 ~ 11723994 (-)
CI01000004_11695427_11698763 NA coding downstream 72266 11694520 ~ 11698763 (-)
CI01000004_11681649_11693474 LRRCC1 coding downstream 77555 11681457 ~ 11693474 (-)
CI01000004_11789063_11823381 NA coding upstream 14727 11788496 ~ 11824740 (-)
CI01000004_11826038_11848540 AMPH coding upstream 51138 11824907 ~ 11848540 (-)
CI01000004_11930044_11933982 NA coding upstream 156071 11929840 ~ 11934156 (-)
CI01000004_11944095_11946749 NA coding upstream 170016 11943785 ~ 11947016 (-)
CI01000004_11974708_11980518 NA coding upstream 200875 11974644 ~ 11982295 (-)
G32147 NA non-coding downstream 22225 11748523 ~ 11748804 (-)
G32145 NA non-coding downstream 43146 11727615 ~ 11727883 (-)
G32143 NA non-coding downstream 44954 11725774 ~ 11726075 (-)
G32137 NA non-coding downstream 62779 11707737 ~ 11708250 (-)
G32067 NA non-coding downstream 103452 11664433 ~ 11667577 (-)
G32150 NA non-coding upstream 2750 11776519 ~ 11780951 (-)
G32154 NA non-coding upstream 8479 11782248 ~ 11783549 (-)
G32163 NA non-coding upstream 68883 11842652 ~ 11844262 (-)
G32174 NA non-coding upstream 118963 11892732 ~ 11892973 (-)
G32195 NA non-coding upstream 126354 11900123 ~ 11907428 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 358122 11406957 ~ 11412907 (-)
G31203 NA other downstream 1020388 10746437 ~ 10750641 (-)
G30316 NA other downstream 2364108 9377937 ~ 9406921 (-)
G29746 NA other downstream 3412902 8354498 ~ 8358127 (-)
G29656 NA other downstream 3805529 7964364 ~ 7965500 (-)
G32207 NA other upstream 602399 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2777031 14541515 ~ 14551352 (-)
G33746 NA other upstream 2795024 14568793 ~ 14569264 (-)
G33750 NA other upstream 2804689 14578458 ~ 14579001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015562 epdr1 coding NC_007113.7 CM002886.2 31833997 ~ 31836902 (+)