CI01000004_11681649_11693474 (LRRCC1)


Basic Information

Item Value
gene id CI01000004_11681649_11693474
gene name LRRCC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11681457 ~ 11693474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_11681649_11693474.mRNA
ATGGCTGTTGGAGAGCTGTGTCTAATTGATAAGGATATTTCAAGTCTACTAGAGGTCCAACTGAATCCCAGCATTTCATCCCTGAATCTTCACTGCAATCGCCTCACTAAGATTGAAGGCTTGACGACAGCATGGCACATTCGACATCTGGACCTGTCATCCAATCACATCTGTCGTATAGAAGGATTAGCTTCCCTGTCCTCACTGCGCACCCTAAACCTGTCCTGCAACTTAATTACCAAAGTAGAAGGTCTCTTGTATCTGCATGGAGCGGAATACAAACTAAAGTACCTGCAGCTTCACAGCAATCGTTTGGAGAGTATGAACCACCTGCTGCAGTGCATGGTGGGACTGCAGAATCTGAAAGATGTTAGTCTTAGCAAGGATGGCGCACAGAATCCACTCTGTTCGCTGCCAGGCTACAGGGAAATGGTTCTTCAATCTCTGCATCAAGTCACCACACTAGATGGAGTAGATCGCCTGGGAAACACATCTCCTTTAGCAGAGGACAGTCCCATGGATGTTCCTGGTCTTGAGGACTTTCTCGAGTTTCTAATTTCATCAGACACTAGTGTTAATGGAGAACTGGCAAAGTCAAATGCTCCTCTCACTACTCCACGGATTGATGAAGTCCTGACCCAGTTTCGGCAACGAGGCGGAATACCAACTGCAGAAAATCAAGAAAATGAGCAGCGAATTAAAAAACTAGAGCAGCAGGTTTCCCATCTAATTCAGAAGATCCCTACAGGGGCCGGCATTAACACCAACAGTTCTGTGCCTTTTGTGGTTCGTAAAGCTAAAAGAGACACCGATCAGACATCAGAGAGCGAATGTGACAGTGGTAAAGAGAACCAACGGCATTCCAGAATCCTGTCTCATCCCAGAGGCTCTGCAGGGAAAAAAATGTCTAAGGACACCAAACCCAAACAATCTGACTGTGTGACAAATACCCAGAAACAGAAGTCGATGAAGCTGGCTGTTGGTGCCCGTAGGAGGACATCAGTCCAGAGCTCTGGGTCTGTTGAAACCATAGAGTCTGTAAAAAAGGCCCCCAAAAGCATCAAAGCAAGTCCTAACAAAAGCTCAACTCAGTCTCAAGAGGAAACCTACAGGGCAATAGTGGAAGAGCGAGACCAGGAGCGGGAGCGGCGCTGGAAGGCAGAGCAGGCTGCAAAGAGACTTACTGAACAAGTCAAGAACCTGCAGTCTCAAGCGAGCGAGGAAAAGGACCTTCAGAGTTTGGCCTTACACACCACAGACAGGCTGAAGGAGATGTTGTTAAAAGAGCGCTCCGATCGGGCAGAACTACAGACTCGTTTGCAGGAGTTGGAGGAGAGGTACAGGTCTACGTTAGAACAGCTGGAGCAGGTGCACAACAGGGAAGACCAACACAAGAGGGCGTTGCACAGTCTGAAGGACAGCATGACCCAAGCAGAGGCTCTCAGGGTACAGCAGCGTGCAGAAGAGATGAAGAGGACTCAGGAGTTAGAGAATAAAGCATCTGCCTTAAAAAGGGAGGTTGAAATTCTCCGCGCATCAGCACGACAGCACAAAGAGAAGCTGCAGCAGTTGCATGAACTGTTGGCCTCCAGAGAGGAGATGCACAGGAAAGAGCTTGCAACACGGCTGCTTCCTGGTGGGTCTGAGTTTAAGGAGGCTGTAGCCAAAGAGGTGGTGGCGGCAGAGCAGAGATTTGCCCAGAAACAGGCTGATTTGGAACAGAAAATCACTGATTCTAGAAGACAGTATGCTGCTCTAGAGGATGAATTTCGCATTGCTCTCACCATTGAGGCAAAGCGTTTCTCAGAGGTTAAGGAGGGGTTTGATCAGGTGTCTGCTGAACTCCTAGAAGTGAAGTCGAGCCTCAGCCAGTCTCAGCAGAAAGAGAAGCAGTCAGCTTCTTTGGTACAGGAGCTCACAGCTATGGTAAAAGAGCAGAAAACACGAATTACTGAGCTCCTCAAAGCCAAAAAAGAAGCTTCCACTGAGTTCAAGGCCCGTGTGCAGTCATTGGAATCCAGGTTGGAGGATGATAAACGACTTAACCTACAGGTGGAGCTACTGAAGAAGGACAAATCCAAGCTGATCTCCCAGCTTACTGCTCAGGAGTCTGTCATAGATGGACTACGGGCAGAGAGGAAGATCTGGGGCCAGGAACTTGCACAGCAAGGTGCATCCTTAGCACAGGACCGTGGTCGACTGGAGGCCAGAATTGAGGTTTTGTTAACCGAACTGGAATCACAGAAGAAGCAGAATGAGAGAGACAATGATGCACTCAGGATTAAAGCTAAGATTGTTGATGACCAGACAGAGACAATTCGTAAACTAAAAGAGGCATTGCTGGAGCGAGATGAGCAGATCCGTAGACTCCGTGATGAGAGTGTGCAGGACCAGCGAAAGTTGAAGCAGCAGCTGGAGGAGGAAATGGCCTCTGCAGTGGATCTCAGAGACACAGTGGAGCAGCTCAGTCTCAGGAAGGAGGAGCTGAAACAACAGCTTCTTGATAAGGAGGTGGAGCTTGATGAGGTTAAAGAGACATACAGGGCCTCAAGTAAGAAATGGCAGGAAAAGGCTGAACTGTTGAACAGGCTTGAGAGCCAGGTGAAGCGAATGAAGGACGGTTTTGATTCCAAAGAGAAAACGCTGCTGGAGGAAAGGGACAAAGCTTCACAAGCACACAGAGCGGCAGTGGAGAAGCTTCACAGTGTGGACGATGCCTTCCGTAGACAACTGGAGACTCTACAAGCTTCCCATCAGGCTGAACTACTTCGTCTTGCGAATGACAAACAGAAACAGATAGAAAAAGCTAATCAGAAGGTGCTCCAGGTGGAGGAGGAAATGCGCCAGCTGCTTGAGGAAACTGAGAGTAATAAAAGGGTAATGGAGGAGAAAATGAGACGCCTCACACAAGTGCTGAAAGACTTCTAACCTCCAACCATTACAAACCAAAAGACAAAAATACTTCAAGATGCCTTATGTCTTATATAAGAAGATTTATGTCACTTATGTCTCCAAGTCTGGCTGCCAACACGAACATATCTTAAAATTATTGTGCTTGTGAGTGTCCAGCTTACTGTGTTTCACTATTTTTTGGCTGTTTCACATTACATAAATAGTAAA

Function

symbol description
lrrcc1 Predicted to be active in centrosome and cytoplasm. Orthologous to human LRRCC1 (leucine rich repeat and coiled-coil centrosomal protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K16475 LRRCC1, CLERC; leucine-rich repeat and coiled-coil domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_11681649_11693474.mRNA True 3120 mRNA 0.48 18 11681457 11693474

Neighbor

gene id symbol gene type direction distance location
CI01000004_11674138_11680916 E2F5 coding downstream 541 11673735 ~ 11680916 (-)
CI01000004_11637053_11663228 NA coding downstream 18139 11636998 ~ 11663318 (-)
CI01000004_11565906_11578581 MRC1 coding downstream 102511 11564985 ~ 11578946 (-)
CI01000004_11454536_11463067 NA coding downstream 216906 11454425 ~ 11464551 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 coding downstream 268703 11406957 ~ 11412907 (-)
CI01000004_11695427_11698763 NA coding upstream 1046 11694520 ~ 11698763 (-)
CI01000004_11720195_11723994 AND2 coding upstream 26314 11719788 ~ 11723994 (-)
CI01000004_11731995_11744636 FAM134B coding upstream 38378 11731852 ~ 11744636 (-)
CI01000004_11768937_11770193 NA coding upstream 75167 11768641 ~ 11770428 (-)
CI01000004_11789063_11823381 NA coding upstream 95022 11788496 ~ 11824740 (-)
G32067 NA non-coding downstream 13880 11664433 ~ 11667577 (-)
G32118 NA non-coding downstream 60725 11619820 ~ 11620732 (-)
G32117 NA non-coding downstream 62863 11609024 ~ 11618594 (-)
G32112 NA non-coding downstream 97066 11584143 ~ 11584391 (-)
G32111 NA non-coding downstream 99467 11581449 ~ 11581990 (-)
G32137 NA non-coding upstream 14263 11707737 ~ 11708250 (-)
G32143 NA non-coding upstream 32300 11725774 ~ 11726075 (-)
G32145 NA non-coding upstream 34141 11727615 ~ 11727883 (-)
G32147 NA non-coding upstream 55049 11748523 ~ 11748804 (-)
G32071 NA non-coding upstream 77555 11771029 ~ 11773769 (-)
G31203 NA other downstream 930816 10746437 ~ 10750641 (-)
G30316 NA other downstream 2274536 9377937 ~ 9406921 (-)
G29746 NA other downstream 3323330 8354498 ~ 8358127 (-)
G29656 NA other downstream 3715957 7964364 ~ 7965500 (-)
G32150 NA other upstream 83045 11776519 ~ 11780951 (-)
G32207 NA other upstream 682694 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2857326 14541515 ~ 14551352 (-)
G33746 NA other upstream 2875319 14568793 ~ 14569264 (-)
G33750 NA other upstream 2884984 14578458 ~ 14579001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location