Gene
RNA
| Item | Value |
|---|---|
| gene id | G32117 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 11609024 ~ 11618594 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU36418 | False | 341 | lncRNA | 0.43 | 2 | 11609024 | 11618594 |
| TU36417 | True | 895 | lncRNA | 0.42 | 6 | 11615831 | 11618594 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_11565906_11578581 | MRC1 | coding | downstream | 30078 | 11564985 ~ 11578946 (-) |
| CI01000004_11454536_11463067 | NA | coding | downstream | 144473 | 11454425 ~ 11464551 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | coding | downstream | 196270 | 11406957 ~ 11412907 (-) |
| CI01000004_11232801_11249384 | NA | coding | downstream | 359640 | 11231443 ~ 11249384 (-) |
| CI01000004_11172493_11174547 | MYL12.2, MYL12.1, MLRN, MYL12A, MYL9 | coding | downstream | 433157 | 11172215 ~ 11175867 (-) |
| CI01000004_11637053_11663228 | NA | coding | upstream | 18404 | 11636998 ~ 11663318 (-) |
| CI01000004_11674138_11680916 | E2F5 | coding | upstream | 55141 | 11673735 ~ 11680916 (-) |
| CI01000004_11681649_11693474 | LRRCC1 | coding | upstream | 62863 | 11681457 ~ 11693474 (-) |
| CI01000004_11695427_11698763 | NA | coding | upstream | 75926 | 11694520 ~ 11698763 (-) |
| CI01000004_11720195_11723994 | AND2 | coding | upstream | 101194 | 11719788 ~ 11723994 (-) |
| G32112 | NA | non-coding | downstream | 24633 | 11584143 ~ 11584391 (-) |
| G32111 | NA | non-coding | downstream | 27034 | 11581449 ~ 11581990 (-) |
| G32103 | NA | non-coding | downstream | 67498 | 11538431 ~ 11541526 (-) |
| G32059 | NA | non-coding | downstream | 104161 | 11504640 ~ 11504863 (-) |
| G31580 | NA | non-coding | downstream | 277455 | 11331311 ~ 11331569 (-) |
| G32118 | NA | non-coding | upstream | 1226 | 11619820 ~ 11620732 (-) |
| G32067 | NA | non-coding | upstream | 45839 | 11664433 ~ 11667577 (-) |
| G32137 | NA | non-coding | upstream | 89143 | 11707737 ~ 11708250 (-) |
| G32143 | NA | non-coding | upstream | 107180 | 11725774 ~ 11726075 (-) |
| G32145 | NA | non-coding | upstream | 109021 | 11727615 ~ 11727883 (-) |
| G31203 | NA | other | downstream | 858383 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 2202103 | 9377937 ~ 9406921 (-) |
| G29746 | NA | other | downstream | 3250897 | 8354498 ~ 8358127 (-) |
| G29656 | NA | other | downstream | 3643524 | 7964364 ~ 7965500 (-) |
| G32150 | NA | other | upstream | 157925 | 11776519 ~ 11780951 (-) |
| G32207 | NA | other | upstream | 757574 | 12376168 ~ 12384780 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 2932206 | 14541515 ~ 14551352 (-) |
| G33746 | NA | other | upstream | 2950199 | 14568793 ~ 14569264 (-) |
| G33750 | NA | other | upstream | 2959864 | 14578458 ~ 14579001 (-) |
