CI01000004_13094468_13114401 (PTCH2)


Basic Information

Item Value
gene id CI01000004_13094468_13114401
gene name PTCH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13093586 ~ 13114998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13094468_13114401.mRNA
ATGGCCTGTGTGATAGCGTGTTAAAATACGAGCTGAGGCTATTGGGAATGTGCAGAGCGGAGCAGCAGTGCAGTGAAAGAGCTCCTCTAGCACTTCCCCCTCCCGGCGCTGATGTGAGGGGCTGCCTGCCTGGGTGGTCTCCCTCTCTCTCCACTTTGGTGAGCTGTTGCTTAGCAGCTAATAATAGGAGATGTTTGCAAAGTAATTTGCCTCTTCCTCGGCCAATGAGAACCAGAGCACTTTTCCATCAAACCACCCTTTTCAGGGTTTGCAAAGGGGCTACCTCTCCAAATGTTACTGCAACAGGATCAGAGGTAGACTGGCGGAATCCGCTCGCGACTTTCTTCTGCTTTAAAACGAGTTACGCGCTATAGCTGGACGAATGAAGACCGAAGGATCTATACGGATTCGCGCACATAATGTTGGGATGGAGTTGGAAGACTTTGGCTCAAGGAAAGACTAGAGAATATTTCTTAAAGTTGAACCCGGTGGATGCGCGTGTCGCGAATCTTGGATTATTACTATTATCGCCTCTGCCTAACGCACCGCGTTTGCCTTTAACTTTCTTCAGCGCTTCTTCTGCCTCCCGTTTGGACTATGGCCTCGGATCCCAGAGACCCGGGACCGGCCGGTGGTGTTTTTGGAGATTTACCCCCAAGTTACACACGCTCTCCGCCGCCTGTGAACTCAGATCTCCTCCGAAGACCCAGTTACTGCCACGCCGCTTTTGCGTTAAAACAGATTTCTAAGGGGAAAGCTGTGGGACAGAAAGCACCACTGTGGATTCGGGCGAAGTTCCAGGCTTTTCTCTTTTCTCTGGGCTGTCACATCCAGCGACACTGTGGAAAAGTCCTTTTCATTGGACTGCTTGTGTTCGGAGCCCTGTCTGTTGGTTTGCGGGTCGCTGCCATTGAAACGGACATTGAGAAACTATGGGTGGAAGCTTTATTTGGTTTTCACACTGCCAAATTCCTTCTAAGCCCCCTAGGCTTTCGCCACACTGCTGATCCCCTGCACAGATGGGCTGTGTGTGAATCGTTAGCCATCTTTGAGAAAGAAGAGGAAGAAAAAATCAAACAAAGAGCTTGGAATGGACATTATGGGGGCTTGACAGGACCAAGGCGAAAGAGCTGGACCGGCTTGTTTTGTTCTTGGTGGTTTCATATACTAATGTGTGTGGGAGAAAAGGGGAAAACAGAAAGAGAGAATGAATTCGTGTATAGGAGAGTGTGTGCGTGGGCACGCACTGGCACCCGACTGTGTATCTGTGCTCTTGGGTTTACTTGGGTGGTGAAAACAGCTGGCAGTCGAGTGAGTAAGGAGCTACGCTACACAAAAGAGAAGCAGGGAGAGGAGTCAGTGTTCACCTCACAGATGCTCATACAGACACCCAAACAGGAAGGAACCAATATTCTTACCCAGGAGGCTTTGCTGCTCCACCTGGAGGCTGCTTTGTCAGCCAGCAAAGTTCAAGTGTCTCTTTATGGAAAATCTTGGGATCTTAATAAAATTTGCTTCAAATCTGGAGTCCCAATTATTGAAAATGTCATGATTGAGAGGATGATTGACAAGCTTTTCCCCTGTATGATCGTGACTCCTTTGGACTGCTTTTGGGAAGGCTCCAAGTTGCAGGGAGGCTCCGCCTACTTACCGGGCATGCCTGACATTCAGTGGATGAATCTGGACCCCCTCAAGCTAATGGAAGAGTTGAGCCAGTTTACATCTTTAGAGGGCTTTCGAGAGATGCTGGATAAGGCTCAGGTTGGCCATGCCTATATGAACCGCCCATGCTTGGATCCCAACGACACAGACTGCCCTTACAGTGCCCCTAATAAGGACCCATGGCAGGTTCCCGACATTGCTGCTGAACTTCAGGGTGGTTGCCATGGTTTCTCCAAGAAGTTCATGCACTGGCAGGAGGAGTTGATCCTGGGTGAAAGAGTAAAGGACTCCCAGAATGCCTTGCAGAGCGCGGAGGCTCTTCAAACCATGTTCCTCCTCATGAGTCCTAAACAGCTCTATGAGCACTTTAAAGATGACTATGAGATCCATGACATCAATTGGAATGAGGACAAGGCCACTGCCATCTTGGAGTCTTGGCAGAGGAAGTTTGTTGAGGTTGTCCATGGGAGCATTCCTCAGAACTCTTCCTCCAATGTTTACGCCTTCTCTACCACCACTCTTAATGACATCATGAAGTCTTTCTCTGACGTCAGCGTAATCAGGGTGGCAGGTGGTTATCTGCTCATGCTGGCATACGCATGCGTGACCATGCTCCGTTGGGACTGTGCTAAGTCTCAGGGTGCTGTGGGGCTGGCAGGAGTGCTGCTAGTCGCTCTATCTGTTGCTGCAGGACTTGGACTGTGCTCACTGTTGGGGCTGTCCTTCAATGCCGCCACCACACAGGAGCGGACAGGTGACTGCCTGAGAAGAACAGGCACCAGTGTGGCTCTCACCTCCATCAATAACATGCTTGCTTTCTTCATGGCTGCCCTAGTGCCTATTCCTGCTCTCCGTGCCTTCTCACTTCAGGCAGCTATTGTGGTGGTCTTTAACTTTGCCATGGTTCTGCTGATCTTCCCTGCCATTCTGAGCTTGGACCTGCAGAGGCGGGAGGACAAAAGACTGGACATCCTGTGCTGTTTCTACAGTCCCTGTTCCTCTCGGGTGATCCAGATCCAGCCTCAGGAGTTCTCCGACGCTAATGACAACCACCAGCATGCTCCGGCCACCCCGACCTACACTGGCTCCACTATAACCACCAGCACCCACATCACCACCACTGTGCAGGCCTTCACCCAGTGTGATGCAGCTGGTCAACATATTGTCACCATCCTGCCACCCACCTCCCAGATCTCCACCAGTCCTCCATCCATGGTCCTATCCACACCCACTCCCACCGCTGACCCTTATGGCTCCCAGCTGTTCACCACCTCCAGCTCTACCCGAGACCTTCTAGCTCAGGTGGAGGAGCCCAAAGAGGGACGAGAGTGTGTGCCTCTTCCCTTCTTTCGCTGGAATCTGTCAAACTTTGCACGGGAAAAGTATGCCCCTCTGTTGCTGAAGCCCGAAACTAAGACTGTAGTGGTCGTTGTTTTCGTGGCTCTTCTGAGCCTCAGCCTCTATGGTACCACAATGGTTCATGATGGACTTTACTTGACTGATATTGTTCCCAGGGACACAAAGGAGTATGACTTCATCACTGCCCAGTTTAAATACTTCTCCTTCTATAACATGTACCTGGTTACCATGGATGGCTTCGACTATGCCCGTTCTCAAAGACAGCTTCTACAACTTCACAATGCCTTCAACTCTGTAAAATATGTAGTTAAAGACAGCAATCACAGACTCCCCAGAATGTGGCTGCACTACTTCCAGGATTGGCTCAAGGGTCTTCAGGCTACATTTGATGCTGATTGGGAAGCTGGCAGGATCACCTCTGACAGCTATCGCAATGGCACAGAAGATGGAGCGCTGGCCTATAAGCTTCTCATACAAACTGGCTCTAAAAAAGACCCTTTCAACTACAGCCAGCTTACATCCCGTCGCCTAGTGGATGAGGATGGTCTCATTCCACCAGAGGTTTTTTACATCTACCTGACAGTATGGGTCAGTAATGATCCGCTGGGCTATGCTGCCTCCCAAGCCAACTTTTACCCCCATCCTCGAGAGTGGATCCATGATAAGTACGACACCACTGGGGAGAACCTTCGCATCCCTGCGGCAGAGCCTCTAGAATTTGCTCAGTTTCCTTTCTACCTAAATGGCCTCAGACAAGCCTCAGACTTCATTGAAGCCATTGAGAGCGTGCGCACAATCTGCGAGGAGTTCATGCGGCAGGGAATCCAGAACTATCCAAACGGCTACCCCTTTTTGTTTTGGGAACAGTACATTGGTCTGCGCCACTGGTTCTTGCTGTCCATCAGCGTAGTGCTTGCCTGCACCTTCCTGGTGTGCGCCATCCTTCTGCTCAACCCCTGGACCGCAGGCATCATTCAAGACTTTCTAAAGAAGAAATGCACAGCTCTCCTGAAGGCTTTTACCTCCGACTGCCTTTGTCCAGAAATTTGGGGACAGGACGGATCTGCCCAGTCACGACCTTGGCCTGCTAAACCCATCCATCAGGGACTGGATGTAGTGGGGGTAGTGGGTGGGTGGGTTTTTATTTTGGCCATGATGACAGTGGAACTTTTTGGTATCATGGGCCTAATTGGTATCAAGCTGAGTGCCATTCCTGTGGTCATCCTTATAGCCTCTGTTGGTATTGGAGTGGAGTTTACTGTGCACATTGCACTGGGTTTCCTGACTGCCATTGGGGACAGGAACACTCGTTCAGCCGTGGCTATGGAGCATATGTTCGCTCCTGTGATTGACGGCGCCATATCCACTCTGCTGGGAGTGCTCATGCTTGCTGGCTCAGAGTTTGACTTCATCATGAGGTGAGTGATTGACACTTCTCCAGACAGGTCTCTGAGGTCAGCCCATATGCTGCCTTTCAAAATGGTGGCAGGCCTTAGGCAGGGAGACAGTTGTCCATGTGGCTCTAGGGTACAGGTGGTAACGTTTGGCTCCCCATCACCTGGTGTTGTCAGTCTCTAACTCCCCTTAGACCACCACAACACTCTTACAAACATTTTTGAGCTGCTTGAATGCACAACAAATGGAGGAAACATCAAGGGAGTGCAGCAGCTGCTTGTAAACATGTAAATATACAACCCACTGTGCGGTGACTCAACATGCACACACTTGCACCCTGATTGTGGGGAGGAGGTCAATGGCCCAATCATTTGGTTGTGAACTCCCTCTAGCCACTGCATTTGGGCAGCTTTTCTGCCTGGTTTAATGCCTGCTTCACAGGAAGAAAAAAAGTCAAATAGTAGTTTTTTTCAACTGAATTTGGGCTCTGCTGAAAGCAAACCACAACCTTGAGAGCCGCCTAAAACAGACCAATGACATAAAAATGACTTAGTTAGAGGATCCAGCACAACATAGCTGCATGTTGAAACTAAAAATTGTCTCTTGATCATTTGTTTTCAAGCACCAAAGAGTAACTTGGATATGAGGAAGAGGTTTGGGTATCCAGGTAACTGCAGAAGGGTGTTAGAGCAGATTGCTCTAAGACAGTGGTAAAACTGGAAAAAAGATTGGGGGTTGGGGATTGGAGCAAGCCATTTGGTGCAAGCGGTGTGCCAGCGCTAGGGCATTCACAGTGGGAGGTCCTGTTTAGATGTAGAGAGAAAGAGAGAGAGAGCTCTGGCCTTCTAGCTGGGGAGTAGCATAAATACATTGCTGTAAACATCTCCTGGCTATGGGACACTGAATAAA

Function

symbol description
ptch2 Predicted to enable hedgehog family protein binding activity; hedgehog receptor activity; and smoothened binding activity. Acts upstream of or within several processes, including cardioblast differentiation; negative regulation of smoothened signaling pathway; and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including central nervous system; digestive system; head; mesoderm; and musculature system. Used to study coloboma. Human ortholog(s) of this gene implicated in basal cell carcinoma; medulloblastoma; and nevoid basal cell carcinoma syndrome. Orthologous to human PTCH2 (patched 2).

GO:

id name namespace
GO:0009954 proximal/distal pattern formation biological_process

KEGG:

id description
K06225 PTCH1; patched 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13094468_13114401.mRNA True 5325 mRNA 0.50 21 13093586 13114998

Neighbor

gene id symbol gene type direction distance location
CI01000004_13089864_13091636 NA coding downstream 1917 13088583 ~ 13091669 (-)
CI01000004_13086552_13088659 NA coding downstream 4688 13084824 ~ 13088898 (-)
CI01000004_12952019_12956814 ATP6V0B coding downstream 136772 12951759 ~ 12956814 (-)
CI01000004_12823734_12925962 B4GALT2 coding downstream 167624 12823734 ~ 12925962 (-)
CI01000004_12781663_12809789 NA coding downstream 283797 12781525 ~ 12809789 (-)
CI01000004_13127356_13168751 EI2BG, EIF2B3 coding upstream 12358 13127356 ~ 13168751 (-)
CI01000004_13208157_13210917 CENPL coding upstream 92883 13207881 ~ 13210917 (-)
CI01000004_13354130_13419831 BRINP2 coding upstream 239132 13354130 ~ 13419831 (-)
CI01000004_13720679_13777075 PAPPA2 coding upstream 605459 13720457 ~ 13777075 (-)
CI01000004_14041671_14073418 TNW, TNN coding upstream 926078 14041076 ~ 14073770 (-)
G32715 NA non-coding downstream 46675 13046262 ~ 13046911 (-)
G32710 NA non-coding downstream 47423 13045819 ~ 13046163 (-)
G32823 NA non-coding downstream 91044 13002231 ~ 13002542 (-)
G32822 NA non-coding downstream 92943 12999142 ~ 13000643 (-)
G32810 NA non-coding downstream 110805 12982456 ~ 12982781 (-)
G32848 NA non-coding upstream 5238 13120236 ~ 13120630 (-)
G32849 NA non-coding upstream 8241 13123239 ~ 13140987 (-)
G32854 NA non-coding upstream 63231 13178229 ~ 13178450 (-)
G32858 NA non-coding upstream 68230 13183228 ~ 13183457 (-)
G32207 NA other downstream 708806 12376168 ~ 12384780 (-)
G32150 NA other downstream 1312635 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 1680679 11406957 ~ 11412907 (-)
G31203 NA other downstream 2342945 10746437 ~ 10750641 (-)
G30316 NA other downstream 3686665 9377937 ~ 9406921 (-)
CI01000004_14543631_14551256 NA other upstream 1435802 14541515 ~ 14551352 (-)
G33746 NA other upstream 1453795 14568793 ~ 14569264 (-)
G33750 NA other upstream 1463460 14578458 ~ 14579001 (-)
G33755 NA other upstream 1466408 14581406 ~ 14581873 (-)
G33756 NA other upstream 1470173 14585171 ~ 14585745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016544 ptch2 coding NC_007113.7 CM002886.2 33969212 ~ 33993636 (-)
bowfin (Amia calva) AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding CM030140.1 CM030140.1 13139180 ~ 13170347 (-)