XLOC_016549 (brinp2)


Basic Information

Item Value
gene id XLOC_016549
gene name brinp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34380982 ~ 34555945 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032572
ATGTGTTGGCAGAGAGCTGCGGTTGTTAGATGGTTCCTCTTGATGCTCCTGTGGCACTGGGCACCTCTGGGCCCTCTGAGCTGGTTTCTGGCTCTGGCTGAGCGTCTGGACCAGAAGACCTCACCGTTCTCTTCCATCTCCGGCCGGAGCAGCGGCCAGCTGGATTGGCTCCTGTCTGATAAAGGGCCCTTCCATCGCTGTCCAGAATACACAGAGTTCAAAGAGCGCTTCCAACAAGGCTTCTCCACACGCTACAAAATCTACAGGGAGTTTAGTCACTGGAAAGTGAACAGCTTGGTGACAGAAAAGAGAGACTTCTTCAAAGCCCCGCTGCCTTTGGCGCCAGAGTTTTTACGCAACCTCAGGCTTCTGGGGAGAAGGCCGAGTCTTCAGCAGATCCATGAGAATCTGATCAAGAAATATGGCACTCATTTCTTGGTATCAGCCACATTGGGAGGAGAGGAGTCACTCACAATTTTCTTGGACAAACAAAAGCTGAGCAAAAAATCGGAGGGCAACGGAAACAGCTCCGTGGTCTCACTAGAAATCTTGCACCAGTTGGCGGCGTCGTACTTCACAGACAGAGAGAGCACCCTGAGAAGACTGCACCACCTGCAGATCGCTACATCTGCCATCAAGGTGACGGAGACCAGAACGGGGCCTCTTGGATGCAGTAACTACGACAGCCTGGATTCCGTCAGCTCCGTCTTAGTGCACAGCCCCGAAAATAAGATCCATCTGAAAGGTCTTCAGGATGTGCTTCCTGAGTTCCTGCGAAATCGTTTTGTGGAGGCGGCCCTCAGTTATGTGGCGTGTAATTCGGAGGGCGAACTACTGTGCCGTAACAATGACTGCTGGTGCCGCTGCTCCACAAAGTTCCCTGATTGTAACTGCCCTTTTGCAGACATCAAAGCCATGGAGGAGAGTCTGCGTAAGAGCAAAGAATCCTGGATCAACCTCAACCAAGACTTCATAGAGTCAGATGAGTTCAAGGCCTTTCTCAAGAAATTGCCAACggatcattttttaaacacctctGCCGTCTTAAAGTTCTGGACGTCAGATCTGGTCCTGCAGAGACGTTATGGCCTGCTGGAGGCGAGCACTAAAGTGGTGCTGGGAAAAGCCATCAAGATAGTGCGCAAACTCTTCGCTCTCAGCAAGCGCTGTCCTACGCAGCCAAAAATCAGCCTGCCTAGAGAAAGGACGCTGGGGTTTTGGCTCAACAAAGCTCAGTCTCTGTTGTACTGCAGTGAGCATGGTGTGCACGGCACATTCTCTGAGGATCTGCAGGGCTGCATCTGCGCCGCAGAGCAACGCACCGTCTGCCAGGGCACTGTGCCATGTAGGGTGGGTGAGGGTACCCTCTGCTCCTCCTGCGCCCCGGACAACATCACCCGCTGTGGCACATGCCTCCCAGGCAGCATCCTGCATATGGGCTTCTGTCGACCCAATATTGCCAACTCTTTGGACCACTATGTCaactttgactttgacatgcCAGACGCAGAGATGCGTTACCTTCTTCAAAGGCTTGACAGTCGCATGGAGGTCCACGCTATTTACATTAGCAATGATGTGCGTTTAGGCAGCTGGTTCAACCCGGCGTGGAGGAAGCGCATGCTGCTCACCCTCAAGAGCAACAAGAACAAGTCCAACCTCATCCACATGCTGATGGGGATCTCTTTCCAGATCTGTTCCACCAAGAACAGCACCCTGGAACCCGTGCCTGCAATCTATGTCAACCCCTTCGGGGGAAGTCACTCCGAGAGCTGGTTTATGCCTGTCAACCAGCAGGACTTCCCGGACTGGGAAAGAACTAAATTGGACGCCTCGCTCCAGTGCTATAACTGGACCCTCCCTCTTGGCAGCAAGTGGAAGTCTTTCTTCGAAACGGTGCACATTTACCTGCGAAGTCGCATCATCACGGACGATCCCACGGTCAATGAGACGCTTTTTTATGAGCCGCTGGATTTGGATGATCACTCGGCTAACCTGGGCTACATGAAAATCAACAGCCTGAAGGTGTTTGGCTACAGCATGCACTTTGATCCCGAGGGGATCAAGGACCTGATCCTGCAGTTGGACTACCCGTACACGCAGGGCTCGCAGGATGCAGCCTTCCTGATGCTTCTGGAGATGAGGGACCGCATCAACCGACTCTCTCCACCCGGGGCCCAGCCGCTGGACCTCTTCTCCTGCCTCCTGAGGCACAGGCTCAAGCTTTCGTCCAGCGAGGTGGTGCGCATACGGGAAGCGCTCCAGAGTTTTAATACCAAGCTTCCCAACTCCAATGAGCCAGAACTCAGCCAGCTGTGCAGCTAG
>TCONS_00032573
GTTGGACAGAGCTCGTTGAAAAGAAAGAGATGCTTTCCTGAAAGACTTGGAGTAGCTCTCCTTTGCGCGAGGCTCACCGTTTTGGGGCTTGGCAGTGAGTGATGACTACAGCACGGGCAGCTCAACTCTAGCTCTAGCATtctggcacacacacactgaaaaacagagagagagagaaggagcgGATGTCACAGAAGAACCATGGCAGGTGCAGTTTTTCTACTTGGAGGAAGCTGGATAATGCAAATGAGTTGAAAGCAGAGAACAGCTTCATATGGATTTATCTGCCTGATTGTAATCTCATGTGATCATACTTGTTTTGGAAGATCACACATTGTTTCTGAGGATCCACATTTATTGTGCTGCTTGGAGCAAAACCTAATTATTGGGACTTTCGTTTCTATCAAAGAACTGATGGTAAAGTTTCTGCATCCGGTTTTCAATCTTTATAAAATATAGAACTACTGGCTCTCAAACATTTTAATTGTACCCTTAAAGAGTCCACTTTATAAGTGGACTCTTTTCGGAGCGTCAATACAATGCCTGGATTACCCTTTTGACTGCCTAGTGAACCCGTGTGAAATCATCGCAGAGGAGGTACGGTGGGGGCTGAGTGTATGGGAGCTGCATTCCTCCACTTGAGACCGAACTGATAATCCAACATCCTGACCGGCGATACAAACCGATCGGATACAAACGCTGTAGGGACAGGACTGGAACCACCCTTCACAGTCTGGGTCAAAGGGATTGGCAGAAGAATGCTGGCGCCAGGTGCCCAGGGGCAGGATGGCGATGTGTTGGCAGAGAGCTGCGGTTGTTAGATGGTTCCTCTTGATGCTCCTGTGGCACTGGGCACCTCTGGGCCCTCTGAGCTGGTTTCTGGCTCTGGCTGAGCGTCTGGACCAGAAGACCTCACCGTTCTCTTCCATCTCCGGCCGGAGCAGCGGCCAGCTGGATTGGCTCCTGTCTGATAAAGGGCCCTTCCATCGCTGTCCAGAATACACAGAGTTCAAAGAGCGCTTCCAACAAGGCTTCTCCACACGCTACAAAATCTACAGGGAGTTTAGTCACTGGAAAGTGAACAGCTTGGTGACAGAAAAGAGAGACTTCTTCAAAGCCCCGCTGCCTTTGGCGCCAGAGTTTTTACGCAACCTCAGGCTTCTGGGGAGAAGGCCGAGTCTTCAGCAGATCCATGAGAATCTGATCAAGAAATATGGCACTCATTTCTTGGTATCAGCCACATTGGGAGGAGAGGAGTCACTCACAATTTTCTTGGACAAACAAAAGCTGAGCAAAAAATCGGAGGGCAACGGAAACAGCTCCGTGGTCTCACTAGAAATCTTGCACCAGTTGGCGGCGTCGTACTTCACAGACAGAGAGAGCACCCTGAGAAGACTGCACCACCTGCAGATCGCTACATCTGCCATCAAGGTGACGGAGACCAGAACGGGGCCTCTTGGATGCAGTAACTACGACAGCCTGGATTCCGTCAGCTCCGTCTTAGTGCACAGCCCCGAAAATAAGATCCATCTGAAAGGTCTTCAGGATGTGCTTCCTGAGTTCCTGCGAAATCGTTTTGTGGAGGCGGCCCTCAGTTATGTGGCGTGTAATTCGGAGGGCGAACTACTGTGCCGTAACAATGACTGCTGGTGCCGCTGCTCCACAAAGTTCCCTGATTGTAACTGCCCTTTTGCAGACATCAAAGCCATGGAGGAGAGTCTGCGTAAGAGCAAAGAATCCTGGATCAACCTCAACCAAGACTTCATAGAGTCAGATGAGTTCAAGGCCTTTCTCAAGAAATTGCCAACggatcattttttaaacacctctGCCGTCTTAAAGTTCTGGACGTCAGATCTGGTCCTGCAGAGACGTTATGGCCTGCTGGAGGCGAGCACTAAAGTGGTGCTGGGAAAAGCCATCAAGATAGTGCGCAAACTCTTCGCTCTCAGCAAGCGCTGTCCTACGCAGCCAAAAATCAGCCTGCCTAGAGAAAGGACGCTGGGGTTTTGGCTCAACAAAGCTCAGTCTCTGTTGTACTGCAGTGAGCATGGTGTGCACGGCACATTCTCTGAGGATCTGCAGGGCTGCATCTGCGCCGCAGAGCAACGCACCGTCTGCCAGGGCACTGTGCCATGTAGGGTGGGTGAGGGTACCCTCTGCTCCTCCTGCGCCCCGGACAACATCACCCGCTGTGGCACATGCCTCCCAGGCAGCATCCTGCATATGGGCTTCTGTCGACCCAATATTGCCAACTCTTTGGACCACTATGTCaactttgactttgacatgcCAGACGCAGAGATGCGTTACCTTCTTCAAAGGCTTGACAGTCGCATGGAGGTCCACGCTATTTACATTAGCAATGATGTGCGTTTAGGCAGCTGGTTCAACCCGGCGTGGAGGAAGCGCATGCTGCTCACCCTCAAGAGCAACAAGAACAAGTCCAACCTCATCCACATGCTGATGGGGATCTCTTTCCAGATCTGTTCCACCAAGAACAGCACCCTGGAACCCGTGCCTGCAATCTATGTCAACCCCTTCGGGGGAAGTCACTCCGAGAGCTGGTTTATGCCTGTCAACCAGCAGGACTTCCCGGACTGGGAAAGAACTAAATTGGACGCCTCGCTCCAGTGCTATAACTGGACCCTCCCTCTTGGCAGCAAGTGGAAGTCTTTCTTCGAAACGGTGCACATTTACCTGCGAAGTCGCATCATCACGGACGATCCCACGGTCAATGAGACGCTTTTTTATGAGCCGCTGGATTTGGATGATCACTCGGCTAACCTGGGCTACATGAAAATCAACAGCCTGAAGGTGTTTGGCTACAGCATGCACTTTGATCCCGAGGGGATCAAGGACCTGATCCTGCAGTTGGACTACCCGTACACGCAGGGCTCGCAGGATGCAGCCTTCCTGATGCTTCTGGAGATGAGGGACCGCATCAACCGACTCTCTCCACCCGGGGCCCAGCCGCTGGACCTCTTCTCCTGCCTCCTGAGGCACAGGCTCAAGCTTTCGTCCAGCGAGGTGGTGCGCATACGGGAAGCGCTCCAGAGTTTTAATACCAAGCTTCCCAACTCCAATGAGCCAGAACTCAGCCAGCTGTGCAGCTAG

Function

symbol description
brinp2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

GO:

id name namespace
GO:0071300 cellular response to retinoic acid biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-621 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

Ensembl:

ensembl_id ENSDARG00000014302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032572 False 2325 mRNA 0.53 7 34380982 34483597
TCONS_00032573 True 3117 mRNA 0.52 8 34380982 34555945

Neighbor

gene id symbol gene type direction distance location
XLOC_016548 si:dkey-21n10.3 coding downstream 162454 34217643 ~ 34218528 (-)
XLOC_016547 cenpl coding downstream 242582 34128738 ~ 34138400 (-)
XLOC_016546 NA coding downstream 272997 34106830 ~ 34107985 (-)
XLOC_016545 eif2b3 coding downstream 308764 34008798 ~ 34072218 (-)
XLOC_016544 ptch2 coding downstream 387346 33969212 ~ 33993636 (-)
XLOC_016550 pappa2 coding upstream 430256 34986201 ~ 35103069 (-)
XLOC_016551 tnn coding upstream 953473 35509418 ~ 35567110 (-)
XLOC_016552 NA coding upstream 1059450 35615395 ~ 35621867 (-)
XLOC_016553 NA coding upstream 1172644 35728589 ~ 35733752 (-)
XLOC_016554 nmnat2 coding upstream 1470238 36026183 ~ 36040820 (-)
XLOC_016543 NA non-coding downstream 454203 33843402 ~ 33926779 (-)
XLOC_016542 NA non-coding downstream 595792 33782659 ~ 33785190 (-)
XLOC_016540 BX548164.1 non-coding downstream 810943 33569922 ~ 33570039 (-)
XLOC_016537 NA non-coding downstream 1099247 33271841 ~ 33281735 (-)
XLOC_016555 NA non-coding upstream 1520251 36076196 ~ 36078638 (-)
XLOC_016619 NA non-coding upstream 1823294 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 2191233 36747178 ~ 36826293 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_13354130_13419831 BRINP2 coding CI01000004 null 13354130 ~ 13419831 (-)