XLOC_016548 (si:dkey-21n10.3)


Basic Information

Item Value
gene id XLOC_016548
gene name si:dkey-21n10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34217643 ~ 34218528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00032571
GGTGGCAACAAAGGATTAAATATAAAATGGGAAATTATCGAGCCAAATTAAGAGGTAGCCAGCTTTCTTGCCCAGAGCTTGAGGTGAACCAGAAAAGGAAGACAAATGAAAACCCTACTCCAAAAGGCTTCAAAAGACCTAGGAAGGCTGAAGTAAATTACTTGCCACCATTTCCATTTGGGGAAACAGGAGAAAGTTTGGAGAAGGAGAGACTAGATCTCCTTAATGAAATTAggaagaaaaacaacaaaaacatcattGGCGAGAAAATGGAGAAGACTTTCTCCTATCGAAGAACAGAAGTAGTTAAGGACTGCCCTGCTGTTAAAGATTTCCTGGAGAGATGGCCAGCCCTTTTCTGTGAATCTGAGatCAAGAATGAATTTAGAAGAATCACCACAATTTCCTTGGAGCGTACATTCTTGGAAAAGCTGGACTTCTATACTCCAAAACTCCTGGCTTTGTTTGAGATGAAGGGTGGGGTTGCTGGCATAAGAATTAGACATTTGCTGGATTCACTCAGCCagCAAGAAGATAGGCTTGAAGATAGGCGAGACGTTGTGATTCGCTGCCTCCTGTCTTTCCTTGGAGAATCAGCTGAGGAGCTCATT

Function

symbol description
si:dkey-21n10.3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-444 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

Ensembl:

ensembl_id ENSDARG00000068325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00032571 True 611 mRNA 0.42 3 34217643 34218528

Neighbor

gene id symbol gene type direction distance location
XLOC_016547 cenpl coding downstream 79243 34128738 ~ 34138400 (-)
XLOC_016546 NA coding downstream 109658 34106830 ~ 34107985 (-)
XLOC_016545 eif2b3 coding downstream 145425 34008798 ~ 34072218 (-)
XLOC_016544 ptch2 coding downstream 224007 33969212 ~ 33993636 (-)
XLOC_016543 NA coding downstream 290864 33843402 ~ 33926779 (-)
XLOC_016549 brinp2 coding upstream 162454 34380982 ~ 34555945 (-)
XLOC_016550 pappa2 coding upstream 767673 34986201 ~ 35103069 (-)
XLOC_016551 tnn coding upstream 1290890 35509418 ~ 35567110 (-)
XLOC_016552 NA coding upstream 1396867 35615395 ~ 35621867 (-)
XLOC_016553 NA coding upstream 1510061 35728589 ~ 35733752 (-)
XLOC_016542 NA non-coding downstream 432453 33782659 ~ 33785190 (-)
XLOC_016540 BX548164.1 non-coding downstream 647604 33569922 ~ 33570039 (-)
XLOC_016537 NA non-coding downstream 935908 33271841 ~ 33281735 (-)
XLOC_016555 NA non-coding upstream 1857668 36076196 ~ 36078638 (-)
XLOC_016619 NA non-coding upstream 2160711 36379239 ~ 36425603 (-)
XLOC_016633 NA non-coding upstream 2528650 36747178 ~ 36826293 (-)

Expression


Co-expression Network