RNA id: TCONS_00032571


Basic Information

Item Value
RNA id TCONS_00032571
length 611
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_016548
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34217643 ~ 34218528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGCAACAAAGGATTAAATATAAAATGGGAAATTATCGAGCCAAATTAAGAGGTAGCCAGCTTTCTTGCCCAGAGCTTGAGGTGAACCAGAAAAGGAAGACAAATGAAAACCCTACTCCAAAAGGCTTCAAAAGACCTAGGAAGGCTGAAGTAAATTACTTGCCACCATTTCCATTTGGGGAAACAGGAGAAAGTTTGGAGAAGGAGAGACTAGATCTCCTTAATGAAATTAggaagaaaaacaacaaaaacatcattGGCGAGAAAATGGAGAAGACTTTCTCCTATCGAAGAACAGAAGTAGTTAAGGACTGCCCTGCTGTTAAAGATTTCCTGGAGAGATGGCCAGCCCTTTTCTGTGAATCTGAGatCAAGAATGAATTTAGAAGAATCACCACAATTTCCTTGGAGCGTACATTCTTGGAAAAGCTGGACTTCTATACTCCAAAACTCCTGGCTTTGTTTGAGATGAAGGGTGGGGTTGCTGGCATAAGAATTAGACATTTGCTGGATTCACTCAGCCagCAAGAAGATAGGCTTGAAGATAGGCGAGACGTTGTGATTCGCTGCCTCCTGTCTTTCCTTGGAGAATCAGCTGAGGAGCTCATT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-444 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

Ensembl:

ensembl_id ENSDART00000134986

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033380 lncRNA downstream 109658 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00033379 lncRNA downstream 290864 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033879 lncRNA downstream 290952 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033878 lncRNA downstream 432453 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033378 lncRNA downstream 432509 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00033381 lncRNA upstream 1396867 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00032579 lncRNA upstream 1396867 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033880 lncRNA upstream 1510061 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032580 lncRNA upstream 1510061 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033881 lncRNA upstream 1857668 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032569 mRNA downstream 79243 34128738 ~ 34138400 (-) False XLOC_016547
TCONS_00032570 mRNA downstream 79579 34129248 ~ 34138064 (-) True XLOC_016547
TCONS_00032566 mRNA downstream 145425 34008798 ~ 34072218 (-) False XLOC_016545
TCONS_00032568 mRNA downstream 145591 34047489 ~ 34072052 (-) True XLOC_016545
TCONS_00032567 mRNA downstream 145625 34008955 ~ 34072018 (-) False XLOC_016545
TCONS_00032572 mRNA upstream 162454 34380982 ~ 34483597 (-) False XLOC_016549
TCONS_00032573 mRNA upstream 162454 34380982 ~ 34555945 (-) True XLOC_016549
TCONS_00032574 mRNA upstream 767673 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032575 mRNA upstream 1290890 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032576 mRNA upstream 1290890 35509418 ~ 35566975 (-) False XLOC_016551
TCONS_00032562 other downstream 647604 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032557 other downstream 762444 33422411 ~ 33455199 (-) False XLOC_016538
TCONS_00032550 other downstream 1531235 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 1550378 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 1551184 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032578 other upstream 1293543 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 1968652 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 1971058 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 1972279 36190807 ~ 36191279 (-) True XLOC_016558
TCONS_00032585 other upstream 1974818 36193346 ~ 36193896 (-) True XLOC_016559

Expression Profile

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