RNA id: TCONS_00032557


Basic Information

Item Value
RNA id TCONS_00032557
length 2360
RNA type nonsense_mediated_decay
GC content 0.42
exon number 7
gene id XLOC_016538
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33422411 ~ 33455274 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAACCAGAGTAACATATATTCATGCTCGAGTGTGTTTCAGATATTCTTCTTTGTTATGTAAAGCTTTAAAGCTTTTATAACTGAatgttatgtatttttttgttttgtatcaaATTGTTTCAGTATTGTGTTTGTTTATCATGCTCTTTCGCTTTGTACAACGTGTCGCGTTTTAAAAGCATGAGTTGCATTTAGCTCAATGATCTCTTTATTTATTTCCAGCTATTTTCCCTCCAGTTGTGGACAAATCTGCTGCTCGACAGTGATGAGTTTTTGTGCTCGGCTCTGAAAATAGCGGCTTCATGGACAATTTCCAGCACCAACAGTCTGTGTGGAATTTAGTAAAGGAAAATGTGCCCTGCTCTGAACTTCCTGAGATCAGAGCTGTGCTTGGAGATGCACTGATTGATACTTACACAGAGTTATATTCAgagGTGGAGATGTGGGAGAAGATTTGGCAGGAGCTGCATTTCTCAGAGCGGGGCAGCAGGCCAGAAGCCCCTGTGTTTCCTCTGGCTGACCCTCCAGCTCTTAAAGAGTTGCTAAAAGCAGAGATTCAATTGTTGCTGCTCACTCTGAGGGAGAAAGCAGCCAGACAGGGCAGAGATGAAGAGGAGGTCATTTCCCAATACAGTCCCAGTGTGGTAAGTTATGCACTGGGCAACACAAAAAGACAGAGAAGTCCAGGCACCTGGCGTGAAAGGAAATCACCTTCCAGACCCCCATCAAGCTTGAGCGAGACTGGAAGCAGGTCAGTCTCCAGCTTCTCATCTCACTCCAGCTGTGAGGAGGAAATCAAGGCCTTAAGACACAAGTTGAACATCACCCATATCGATGAGGTAGTGGCCCATCTCAGGTCAGTCCTGACTGAAGAATCTGAAGCTTTGAGAAAAGATGTGCAGGCCTTGCAGGAAAACCTTGAGGCTGAGCGAGTCAGTACTCAGACAGAGCCTGTGTGCCCTGAACCCACATTAGCAGGTACATGGAGTTAATCCTGACAAATGACATTGGTTTCATGGCAGTTTTTTGGAGCAGCCCTTTACATCTTTCTTCATAAACATTGCATCATAATGCccattttatttgaaatcttttctccaaatgtgatcttttttgaATTGTGTATTACTACCATCTAGTGGTTCACCACTGAATTCTTATCCACTCCGTTCCACAGCTCAATAAAGAATGATCAAGGTTACTATCCTCAGTCTTTTCAGAGCAGAATACTTTTCAATTGAAGTAATAAAGCagaatttcttttatttcttgattttttttcaggGTCATTATGAAAAGGTTTATCCTGGAGCAAAACTACCTTTAATTGATTCCTTGTCTTTCAGAGCTCAAAGAAGAACGGAGACTAATTCAGAGGGATCTGAATGTTCAGGGTTCAATGAGCTGCTCCTACAAATCAAACAATCGGAGTACCAGAAACCCACAAAAACACACAAGGGGAGCACTTGAACTAGCTCTTTCTACAGATGACCCTGAAACCGCAAATCCATTAAACTCAGCACCTTCTTGTTTGAAACCATGTCCACCCAGAGAAACGAACCACACGAGGAGCAATCGAGCATTAACGATCTCCTCAGACGCCGACTCCACTGTCTCTGTGTCTGCTCTGGAGTATGAAGACAACATGTACAAACACAGAGGACATTCGCTGAGAGCTTCAGCCTTCAGACTTATTCCTGCAGCCTCCGTCAAACACTTTCTCCAGCAGATAGAGACAGGAAACGGCGAACCAGAACATCTCCATCCCACACCTCCCGCAGTGCAGAGAACAGCCGACAGAGGGCGCAAAGTGCCCCGACAGATAGACTTCTCTCAGCCGGACGGCTTGCTCACTTCTCATTGACCGAGAACACACCATTAGCTGGACGTTACAGCTCAATTCAGTCTTTAAACGTCGGGAAAAAATCAGGTAAAACACACACCAAGAGATAAAAGACCAAAAGCAGAAGCTgatctttaaaataaactttatttaccATTTCAAATTGAACAGTTTAAGATATACAGCTGACAAGACTAAGACAAATTCAATGCAGTTTGGCCCTAAAGTTGAAAAGACGTGGTTAGATATGTTGGATCAAGTACTGAGCTCATGTCATTGTGCTTGTCATTCTACTTCACCATGAGCACAGAAGtatacacacgctcacacactcacacacacacactactgtaaatatatcgtTTGTTTTATATAGGAGGTATGGGAGAGAATgggatttatttttttgctgttgtgaATTATTTTCTGTTGCTTTCAAACACGTGTCTTTAAAGTGCCGTGACCACATGAAAATACATGacatttatttgaataaacatTTCAGTGTAACCAAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-18 Is expressed in axis; forerunner cell group; nervous system; and ventral mesoderm. Orthologous to human CCDC24 (coiled-coil domain containing 24).

Ensembl:

ensembl_id ENSDART00000056656

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032556 lncRNA downstream 140676 33271841 ~ 33281735 (-) True XLOC_016537
TCONS_00033377 lncRNA downstream 197495 33220032 ~ 33224916 (-) True XLOC_016536
TCONS_00033877 lncRNA downstream 380252 33037373 ~ 33042159 (-) True XLOC_016535
TCONS_00032555 lncRNA downstream 380747 33037373 ~ 33041664 (-) False XLOC_016535
TCONS_00033876 lncRNA downstream 382391 33037373 ~ 33040020 (-) False XLOC_016535
TCONS_00033378 lncRNA upstream 327460 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00033878 lncRNA upstream 329527 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033879 lncRNA upstream 388203 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033379 lncRNA upstream 469975 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033380 lncRNA upstream 651631 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00032553 mRNA downstream 596303 32812402 ~ 32826108 (-) False XLOC_016534
TCONS_00032554 mRNA downstream 596494 32812403 ~ 32825917 (-) True XLOC_016534
TCONS_00032552 mRNA downstream 652652 32761226 ~ 32769759 (-) True XLOC_016531
TCONS_00032551 mRNA downstream 653460 32761130 ~ 32768951 (-) False XLOC_016531
TCONS_00032547 mRNA downstream 683876 32676002 ~ 32738535 (-) False XLOC_016530
TCONS_00032560 mRNA upstream 21567 33476766 ~ 33645411 (-) False XLOC_016539
TCONS_00032561 mRNA upstream 21889 33477088 ~ 33676494 (-) True XLOC_016539
TCONS_00032563 mRNA upstream 226000 33681199 ~ 33687214 (-) True XLOC_016541
TCONS_00032564 mRNA upstream 514013 33969212 ~ 33993636 (-) False XLOC_016544
TCONS_00032565 mRNA upstream 514468 33969667 ~ 33993533 (-) True XLOC_016544
TCONS_00032550 other downstream 736003 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 755146 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 755952 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032537 other downstream 756196 32665124 ~ 32666215 (-) False XLOC_016527
TCONS_00032499 other downstream 1060637 32357895 ~ 32361774 (-) False XLOC_016514
TCONS_00032562 other upstream 114723 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032578 other upstream 2056872 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 2731981 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 2734387 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 2735608 36190807 ~ 36191279 (-) True XLOC_016558

Expression Profile

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