RNA id: TCONS_00032578


Basic Information

Item Value
RNA id TCONS_00032578
length 559
RNA type processed_transcript
GC content 0.38
exon number 3
gene id XLOC_016551
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 35509418 ~ 35567110 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtggaaagtagtggagtaaaggtACAGGTACAGCACTAAAAAACtactcaagtgaaagtaaaaatgcacatttttaaaactacttagtaaactaCAATTTAGAATAgtagaaaaactactcaattacagtaatttgagtatttgtatttttgtgtctTCACACCACTGGTCATTAAACGCTTCTATTTAATGATCCTTTACACAACCCTGTCTTTCACTTATAATATAACATGTATGCTCCTTCCTTTGGGTGAGAATGCTTTTGTGAATGCCATTTGCTCACCTTATCATCATGCCATTGACAATATGCCACTGAGGTCTTCCAGAGAAGAAACACAGGCAAAGTAGATTTCATGAAGAAATGGAGAGACTACATGAAAGGCTTTGGGGAACTGACAGAAGAATTCTGGCTTGGCTTGGACAAGATCCACGAACTGACCAACACTCCAACACAGTATGAGGCGCGTTTTGATCTGGGCTCAGGATCAGATCGGAAATATGCTGTCTATGATAACTTCAAAGTAGCTCCATCCAAACAGAAGTTCAAACTTACCATTGG

Function

GO:

id name namespace
GO:1990138 neuron projection extension biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-262 Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion and neuron projection extension. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

Ensembl:

ensembl_id ENSDART00000136312

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033380 lncRNA downstream 1404086 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00033379 lncRNA downstream 1585292 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033879 lncRNA downstream 1585380 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033878 lncRNA downstream 1726881 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033378 lncRNA downstream 1726937 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00033381 lncRNA upstream 102519 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00032579 lncRNA upstream 102519 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033880 lncRNA upstream 215713 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032580 lncRNA upstream 215713 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033881 lncRNA upstream 563320 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032574 mRNA downstream 409002 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032573 mRNA downstream 956126 34380982 ~ 34555945 (-) True XLOC_016549
TCONS_00032572 mRNA downstream 1028474 34380982 ~ 34483597 (-) False XLOC_016549
TCONS_00032571 mRNA downstream 1293543 34217643 ~ 34218528 (-) True XLOC_016548
TCONS_00032569 mRNA downstream 1373671 34128738 ~ 34138400 (-) False XLOC_016547
TCONS_00032581 mRNA upstream 513307 36026183 ~ 36040820 (-) True XLOC_016554
TCONS_00032644 mRNA upstream 834054 36346930 ~ 36350082 (-) True XLOC_016618
TCONS_00032645 mRNA upstream 977229 36490105 ~ 36490570 (-) True XLOC_016620
TCONS_00032646 mRNA upstream 980973 36493849 ~ 36494308 (-) True XLOC_016621
TCONS_00032647 mRNA upstream 983760 36496636 ~ 36497113 (-) True XLOC_016622
TCONS_00032562 other downstream 1942032 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032557 other downstream 2056872 33422411 ~ 33455199 (-) False XLOC_016538
TCONS_00032550 other downstream 2825663 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 2844806 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 2845612 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032582 other upstream 674304 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 676710 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 677931 36190807 ~ 36191279 (-) True XLOC_016558
TCONS_00032585 other upstream 680470 36193346 ~ 36193896 (-) True XLOC_016559
TCONS_00032586 other upstream 682709 36195585 ~ 36196119 (-) True XLOC_016560

Expression Profile

//