RNA id: TCONS_00032569


Basic Information

Item Value
RNA id TCONS_00032569
length 2114
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_016547
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34128738 ~ 34138400 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGACATTCTGAATCTGACAATCGTGAGGCTGGTTCCGTGTTTCTTAGTGCGGCGCATGGAGTGCTTAGGGATGACTAATCACGCAAGAACTAATCGATTTAATCTTTTGTAACATAGCATTTATCAACTTTGTTACATCTGTGTACCACAGTTTAACATTGTTTAAAACCTTTGTTTAACTTAACTCGTATTATGCAGAGTTGacgaaaataaaaacaagtaacaCGCGTTTGCCCTTGCTCTTAGTAATCTGTTAGTATTCCTGCCTTACTGCGTTGCATGATGGGAAAGCGGGATGTTCAAATCTTCTTCCTGCTTTTTCGCTCGGTGTGTTGTTGATCGTCATGGAGGGGAGAGGCAGTGCCGTCAATACTCCTGCCAGCAGACCTGTTACTCGTAAAAGCAAAAGTTATGGTCGGAGCTGTGTGGAAGCACCATCGTATTTCTGGCAAACACCTGGACATTTAACAGTCCTGAAGGTCCCAACCAGTAGAGGAGCTGCCAAATCACAAATCATCACTAATAAGGTTGACCCAGAGCATATCGCTCTTTTGGTAAAAAATGAGTGGAAGCTGTCATACGTGACCCCTCTGCATCACTTTAGACATACACAGCTGAAATCATATGCCAAACATCTGTCAGCTTTCATCGTAGCAGAGAAACAACAAGGAGTTGCGGTTGAAGTCGGGTTAGATGCAGGATTCAAGGTCACTTTTACTGCAGTTCTCGGACTGGCGGAAACTGATGAGGATGCAGAAACTGTTTTCATTCAGATTCAATCCAAACCAGTGTTTGCTGCAGCAGCTGATGCACCTAAAGTAGTGTGGCGCGGTTGGCTCACGTGTGTCAACGGTGATCCAGAATACCTGCGCTCATTACCTCCTGATTTCGTCAGCTTGCCTCTGTTCTGCACAAGCGGACCAGAGTCTCTAACAAACCTGGTTAAGTCCTGGTTCGAGAGGGCTTTTGATTGCAACTTTGGCTCTTTGGCTTTAAACTCCAGCACTCTAAACTGGCTGGCTGCGTTGTGGACGGGTTGCCATCCCGCCTGCAATATTCGCTATCTCAAACTGTCCTGGAGTCTGCCGACAGAGCCGCCTCTGGACGTCCTGTACACTGTGAACCCACAGGACGCCTGGGAGCTCTGGAACAGCATTCACCCTCAGGAGAACACTGATGACCGCATCGATATTAAAGACGTCCAGGCTTTCATGAGCGGCATGGAGACTCACTTTTTCAGACACTTTAAGATCCACCTGTCGGCTGGCACACTTCTGAAAGTTTCTACTGCTCTGGGATCAGCACATCATGATGGAAAAATCAAGattgGAAACAGTGACTACATCACCACCTTACTTGCTCTGCTGACAGAATGTGCCCTTCTGAAAATGCCGacctaattacatttttttttttttggtctttttttgtaTAAACTTTTGTAAATTTTAAGATCTAttctgttatatttattttttttgttttgtaaaatatgtttatgtctgtttttcagcttttacatttttaaacttttgGATCCTTAATTTCTTTCATTTGAGAACTTTTGAGGCATTTATCAAGACAAATAACTATAGACCAGTTCACAGAGCAGCTTCTATTAATGCAATAACTCATTCATCGCAAGTAAATTTGATTTTTCACTACATGTATAGGTGTGTATAAACAGTTAAcacaaatataaattaatgtCTGTTTGTATATTGTAATGATTAGATTTTTGTACCCTTGAAAGTATGTAAATAGCCTCTGTGCATTTGTTCTCCTTATGTAATGGATGGTGGCTGACTTTATTTTGTTACGTTTTGCTCACAGTGCCATCAATGTCAGTATCTTCCAATtgaaatgtataatgttttataaagtaTGAAACTGGCATGCAAaccttttgttttatattggaTTTTGAAATACTAGTTTCTTTGTAACTGGaccattttgtgttgttttatatcCAAATATTGGTAACATTGCAAAGAGCTGCGTTTAAGACACCCTACGTTTAAAGATTTACAGCAGAAAATGGGCTAGGATGTGCAAatcaattattttgtatttaagtaACCTTTTGTCTCTCAATAAACCACAAAAGCA

Function

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040930-6 Predicted to be located in chromosome, centromeric region and nucleus. Orthologous to human CENPL (centromere protein L).

Ensembl:

ensembl_id ENSDART00000056667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033380 lncRNA downstream 20753 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00033379 lncRNA downstream 201959 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033879 lncRNA downstream 202047 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033878 lncRNA downstream 343548 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033378 lncRNA downstream 343604 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00033381 lncRNA upstream 1476995 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00032579 lncRNA upstream 1476995 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033880 lncRNA upstream 1590189 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032580 lncRNA upstream 1590189 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033881 lncRNA upstream 1937796 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032566 mRNA downstream 56520 34008798 ~ 34072218 (-) False XLOC_016545
TCONS_00032568 mRNA downstream 56686 34047489 ~ 34072052 (-) True XLOC_016545
TCONS_00032567 mRNA downstream 56720 34008955 ~ 34072018 (-) False XLOC_016545
TCONS_00032564 mRNA downstream 135102 33969212 ~ 33993636 (-) False XLOC_016544
TCONS_00032565 mRNA downstream 135205 33969667 ~ 33993533 (-) True XLOC_016544
TCONS_00032571 mRNA upstream 79243 34217643 ~ 34218528 (-) True XLOC_016548
TCONS_00032572 mRNA upstream 242582 34380982 ~ 34483597 (-) False XLOC_016549
TCONS_00032573 mRNA upstream 242582 34380982 ~ 34555945 (-) True XLOC_016549
TCONS_00032574 mRNA upstream 847801 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032575 mRNA upstream 1371018 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032562 other downstream 558699 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032557 other downstream 673539 33422411 ~ 33455199 (-) False XLOC_016538
TCONS_00032550 other downstream 1442330 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 1461473 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 1462279 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032578 other upstream 1373671 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 2048780 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 2051186 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 2052407 36190807 ~ 36191279 (-) True XLOC_016558
TCONS_00032585 other upstream 2054946 36193346 ~ 36193896 (-) True XLOC_016559

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_13208157_13210917.mRNA True 1392 mRNA 0.43 5 CI01000004 13207881 ~ 13210917 (-)