RNA id: TCONS_00032567


Basic Information

Item Value
RNA id TCONS_00032567
length 1737
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_016545
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34008798 ~ 34072218 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTAACGGTCTTATGTCATTATACAGAAATCTTGATAGTTTTTTTGCAGACAGCCAGAGATTAAACATTGTGACAGTTTTCACTTGTTATTAAACTTTTCATTTATCTAGTTAGAAACTCTCGGTTTTAACAGAACTTATTTGAAGACGGCGAGGCAAGCCTGATCCATATGAACGTCTGCTACAGTGCTGCAGCTTTCACGTGCACGGACTCGATACTTTACACATTATAAACATTTGATAATAAACACAGTGTTCGGGATGGAGCTACAGGCGGTGCTGATGGCAGCCGGTGGAGGCTCCAGGATGATGGATCTCACCTATAACACCCCCAAACCTCTGCTTCCTGTGGGCAACAAACCCCTCATCTGGTACCCCCTTAACCTGCTGGAGAGAGTGGGATTTGAAGAGGTGATTGTCATCACAACTAAAGAGGTTCAAAAGGCCCTCAGCACTGATCAACGCTTGAAGACGGATGTGAAGATGAAGTTGGATGTGGTGTGCATTCAAGAAGAGGCTGATATGGGCACCGCAGATGCTCTTCGACACATCCAGCAAAAGATCAAGacagacatctTAGTGCTGAGCTGTGATTTGATAACTGATGTGGCCCTGCATGAGGTTGTGGACCTCTTCCGTGCACACAACGCCACGCTGTCCATGCTTATGAGCAAAGTGCACGAATTCACAGAGACCGTCCCGGGCCAAAAGGGCAAGAAAAAAGCAGGAGAACAGCGGGACTTTGTCGGCGTGGACGTCACAGGGAAGAGGCTTCTGTTCATGGCCAATGAGGCAGATCTGGAGGAAGGCCTTGTTCTCCGGAAGTCCATCATGCGCAAACATCCCAGAATGTTCATCAAGACCGGCCTGCTGGATGCACACCTGTACTGCCTGAAGAGATCCGTGGTGGATTTCTTAGTTCACAACAAGTCTGTCACTTCAATCAGAGGAGAATTAGTGCCGTATTTGGTCCGTAAGCAGTTCTCAAAGTCTCTAAACTCCCAACATGTCACCGAGGATTCAGAGAAGAATCAAAAGCAACAGGAAGCTCACATCAATATGGATCTCCTCAGCACCAGTAAAGACGAGGCGCTGCTACAGCTTGCCCGGGAGAGGTCGTGTTGGAACGATCATCGTGGAGACATGAGCGAAGCCTACCATGGCGGTAAAATACGCTGCTATGTTCACATCATGGAGGACGGCATGTGTTATCGCGTCAATACACTCGCCGCTTACATAGAGGCCAATCGTGTGGTTCCAAAGTTGTTTGAGGAACCTCCAATCCATCCAACTGCGGTGGTCTCGGAACGCTCTTTGGTTGGGAGTGACAGCATAATTGGGCCATCTTGTCAGATATCGGACAAGACATCAATCAAGCGCTCAAATGTTGGCACATCAACTGTAATCAAGGAAAAGGTGAAGATCACCAACTCCATCATCATGAACGGAGTCACTATTGAAGAAGGGTGCAACATCCAGGGCAGTGTGATCTGCAGTCACGCGGTGATTGGACGTGGAGCCGACATCAAGTACTGTCTGGTGGGCAGCGGGCAGCGCGTCGATCCAGAGGCTGAAAGAACCAATGAGGTCATCGTAGGATCTGACCAGCTCATGGAAATCTAGAACCCTGCTGGAGATCCAGAACAGGCCTGAAGACGAACACAACCTGCCTCCCCCCGCTTCAACACCCTCCATTCTTTTATGTGTCCGAATTAAAATGGATTTATTTATCTCAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032045 guanyl-nucleotide exchange factor complex cellular_component
GO:0005851 eukaryotic translation initiation factor 2B complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko05168 Herpes simplex virus 1 infection
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040426-1039 Predicted to enable guanyl-nucleotide exchange factor activity and translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2B complex and guanyl-nucleotide exchange factor complex. Is expressed in eye and gut. Human ortholog(s) of this gene implicated in leukoencephalopathy with vanishing white matter. Orthologous to human EIF2B3 (eukaryotic translation initiation factor 2B subunit gamma).

Ensembl:

ensembl_id ENSDART00000020786

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033379 lncRNA downstream 82176 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033879 lncRNA downstream 82264 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033878 lncRNA downstream 223765 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033378 lncRNA downstream 223821 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00032556 lncRNA downstream 727220 33271841 ~ 33281735 (-) True XLOC_016537
TCONS_00033380 lncRNA upstream 34812 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00033381 lncRNA upstream 1543377 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00032579 lncRNA upstream 1543377 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033880 lncRNA upstream 1656571 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032580 lncRNA upstream 1656571 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00032564 mRNA downstream 15319 33969212 ~ 33993636 (-) False XLOC_016544
TCONS_00032565 mRNA downstream 15422 33969667 ~ 33993533 (-) True XLOC_016544
TCONS_00032563 mRNA downstream 321741 33681199 ~ 33687214 (-) True XLOC_016541
TCONS_00032561 mRNA downstream 332461 33477088 ~ 33676494 (-) True XLOC_016539
TCONS_00032560 mRNA downstream 363544 33476766 ~ 33645411 (-) False XLOC_016539
TCONS_00032569 mRNA upstream 56720 34128738 ~ 34138400 (-) False XLOC_016547
TCONS_00032570 mRNA upstream 57230 34129248 ~ 34138064 (-) True XLOC_016547
TCONS_00032571 mRNA upstream 145625 34217643 ~ 34218528 (-) True XLOC_016548
TCONS_00032572 mRNA upstream 308964 34380982 ~ 34483597 (-) False XLOC_016549
TCONS_00032573 mRNA upstream 308964 34380982 ~ 34555945 (-) True XLOC_016549
TCONS_00032562 other downstream 438916 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032557 other downstream 553756 33422411 ~ 33455199 (-) False XLOC_016538
TCONS_00032550 other downstream 1322547 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 1341690 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 1342496 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032578 other upstream 1440053 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 2115162 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 2117568 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 2118789 36190807 ~ 36191279 (-) True XLOC_016558
TCONS_00032585 other upstream 2121328 36193346 ~ 36193896 (-) True XLOC_016559

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_13127356_13168751.mRNA False 1320 mRNA 0.50 10 CI01000004 13127356 ~ 13168751 (-)