RNA id: TCONS_00033379


Basic Information

Item Value
RNA id TCONS_00033379
length 246
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_016543
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33843402 ~ 33926779 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAATTCAATCAAAAAGccagtttgtttaattttaacatcaaatctGGTAACATAAAGGCTAGGAATCAATCAGTCTTTGAAAGCTAGTGTCTTGGAGGCTAACTTAACGTTATACCAAGTGACAGAATGCACAGAAAACACATTGTCATGTTACTTGTTGCTAAACCAGGGTGAGTCTATACCTTTTCTACTATTATCACACAGCTACTTTTtggatgttatttttaatttctttataagTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033878 lncRNA downstream 139984 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033378 lncRNA downstream 140040 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00032556 lncRNA downstream 643439 33271841 ~ 33281735 (-) True XLOC_016537
TCONS_00033377 lncRNA downstream 700258 33220032 ~ 33224916 (-) True XLOC_016536
TCONS_00033877 lncRNA downstream 883015 33037373 ~ 33042159 (-) True XLOC_016535
TCONS_00033380 lncRNA upstream 180051 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00033381 lncRNA upstream 1688616 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00032579 lncRNA upstream 1688616 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033880 lncRNA upstream 1801810 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032580 lncRNA upstream 1801810 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00032563 mRNA downstream 237960 33681199 ~ 33687214 (-) True XLOC_016541
TCONS_00032561 mRNA downstream 248680 33477088 ~ 33676494 (-) True XLOC_016539
TCONS_00032560 mRNA downstream 279763 33476766 ~ 33645411 (-) False XLOC_016539
TCONS_00032559 mRNA downstream 469900 33434660 ~ 33455274 (-) True XLOC_016538
TCONS_00032558 mRNA downstream 470010 33423259 ~ 33455164 (-) False XLOC_016538
TCONS_00032564 mRNA upstream 42433 33969212 ~ 33993636 (-) False XLOC_016544
TCONS_00032565 mRNA upstream 42888 33969667 ~ 33993533 (-) True XLOC_016544
TCONS_00032566 mRNA upstream 82019 34008798 ~ 34072218 (-) False XLOC_016545
TCONS_00032567 mRNA upstream 82176 34008955 ~ 34072018 (-) False XLOC_016545
TCONS_00032568 mRNA upstream 120710 34047489 ~ 34072052 (-) True XLOC_016545
TCONS_00032562 other downstream 355135 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032557 other downstream 469975 33422411 ~ 33455199 (-) False XLOC_016538
TCONS_00032550 other downstream 1238766 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 1257909 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 1258715 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032578 other upstream 1585292 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 2260401 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 2262807 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 2264028 36190807 ~ 36191279 (-) True XLOC_016558
TCONS_00032585 other upstream 2266567 36193346 ~ 36193896 (-) True XLOC_016559

Expression Profile

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