RNA id: TCONS_00032559


Basic Information

Item Value
RNA id TCONS_00032559
length 764
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_016538
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 33422411 ~ 33455274 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAACTGGAATGTTTACACTGATACAGGAAGCTACGATTGTTCTGTGTCCGCTGCTATTTTCCCTCCAGTTGTGGACAAATCTGCTGCTCGACAGTGATGAGTTTTTGTGCTCGGCTCTGAAAATAGCGGCTTCATGGACAATTTCCAGCACCAACAGTCTGTGTGGAATTTAGTAAAGGAAAATGTGCCCTGCTCTGAACTTCCTGAGATCAGAGCTGTGCTTGGAGATGCACTGATTGATACTTACACAGAGTTATATTCAgagGTGGAGATGTGGGAGAAGATTTGGCAGGAGCTGCATTTCTCAGAGCGGGGCAGCAGGCCAGAAGCCCCTGTGTTTCCTCTGGCTGACCCTCCAGCTCTTAAAGAGTTGCTAAAAGCAGAGATTCAATTGTTGCTGCTCACTCTGAGGGAGAAAGCAGCCAGACAGGGCAGAGATGAAGAGGAGGTCATTTCCCAATACAGTCCCAGTGTGGTAAGTTATGCACTGGGCAACACAAAAAGACAGAGAAGTCCAGGCACCTGGCGTGAAAGGAAATCACCTTCCAGACCCCCATCAAGCTTGAGCGAGACTGGAAGCAGGTCAGTCTCCAGCTTCTCATCTCACTCCAGCTGTGAGGAGGAAATCAAGGCCTTAAGACACAAGTTGAACATCACCCATATCGATGAGGTAGTGGCCCATCTCAGGTCAGTCCTGACTGAAGAATCTGAAGCTTTGAGAAAAGATGTGCAGGCCTTGCAGGTAAGGGCTTATTTTGACGT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-18 Is expressed in axis; forerunner cell group; nervous system; and ventral mesoderm. Orthologous to human CCDC24 (coiled-coil domain containing 24).

Ensembl:

ensembl_id ENSDART00000132221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032556 lncRNA downstream 152925 33271841 ~ 33281735 (-) True XLOC_016537
TCONS_00033377 lncRNA downstream 209744 33220032 ~ 33224916 (-) True XLOC_016536
TCONS_00033877 lncRNA downstream 392501 33037373 ~ 33042159 (-) True XLOC_016535
TCONS_00032555 lncRNA downstream 392996 33037373 ~ 33041664 (-) False XLOC_016535
TCONS_00033876 lncRNA downstream 394640 33037373 ~ 33040020 (-) False XLOC_016535
TCONS_00033378 lncRNA upstream 327385 33782659 ~ 33785134 (-) False XLOC_016542
TCONS_00033878 lncRNA upstream 329452 33784726 ~ 33785190 (-) True XLOC_016542
TCONS_00033879 lncRNA upstream 388128 33843402 ~ 33926691 (-) False XLOC_016543
TCONS_00033379 lncRNA upstream 469900 33925174 ~ 33926779 (-) True XLOC_016543
TCONS_00033380 lncRNA upstream 651556 34106830 ~ 34107985 (-) True XLOC_016546
TCONS_00032553 mRNA downstream 608552 32812402 ~ 32826108 (-) False XLOC_016534
TCONS_00032554 mRNA downstream 608743 32812403 ~ 32825917 (-) True XLOC_016534
TCONS_00032552 mRNA downstream 664901 32761226 ~ 32769759 (-) True XLOC_016531
TCONS_00032551 mRNA downstream 665709 32761130 ~ 32768951 (-) False XLOC_016531
TCONS_00032547 mRNA downstream 696125 32676002 ~ 32738535 (-) False XLOC_016530
TCONS_00032560 mRNA upstream 21492 33476766 ~ 33645411 (-) False XLOC_016539
TCONS_00032561 mRNA upstream 21814 33477088 ~ 33676494 (-) True XLOC_016539
TCONS_00032563 mRNA upstream 225925 33681199 ~ 33687214 (-) True XLOC_016541
TCONS_00032564 mRNA upstream 513938 33969212 ~ 33993636 (-) False XLOC_016544
TCONS_00032565 mRNA upstream 514393 33969667 ~ 33993533 (-) True XLOC_016544
TCONS_00032550 other downstream 748252 32682201 ~ 32686408 (-) True XLOC_016530
TCONS_00032544 other downstream 767395 32667132 ~ 32667265 (-) True XLOC_016529
TCONS_00032543 other downstream 768201 32666324 ~ 32666459 (-) True XLOC_016528
TCONS_00032537 other downstream 768445 32665124 ~ 32666215 (-) False XLOC_016527
TCONS_00032501 other downstream 1073197 32358039 ~ 32361463 (-) False XLOC_016514
TCONS_00032562 other upstream 114648 33569922 ~ 33570039 (-) True XLOC_016540
TCONS_00032578 other upstream 2056797 35512071 ~ 35512876 (-) True XLOC_016551
TCONS_00032582 other upstream 2731906 36187180 ~ 36187673 (-) True XLOC_016556
TCONS_00032583 other upstream 2734312 36189586 ~ 36189919 (-) True XLOC_016557
TCONS_00032584 other upstream 2735533 36190807 ~ 36191279 (-) True XLOC_016558

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_12781663_12809789.mRNA False 1631 mRNA 0.48 9 CI01000004 12781525 ~ 12809789 (-)