G33441


Basic Information

Item Value
gene id G33441
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14417926 ~ 14419034 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU37906
GATGATGTGGTGGACTTTTGCCGAGCTGAGAACTCTGCTTGGTGGGCGATTGCTGCTGTTGTTGTTGCTGTACTTGGAGCTGCACAGATTGTTGCAAGGCTTGTTGGGATGGTTGTGGAGGGGGCGGCTGTGTCTGCTGAGGCTGGGGAGGGCCTTGGTTTAGGGCTCCAGGGCCCGAGGGCCTCTGCTGGCTGTAGGGAATGTGTGAGGGTTTCCCTGTCTGCACCGGATTGGCAGATTGAGGGTGGGAGGCAGTCTGGAGGAAGGGTGCAGGTACGGATACACCTGTGGGGAAGGTGAAGCCCGGGCTCATGGAGAATGCCACGGGAGGAGGGATCACATATGCTGGTGGAGGGAAGCCTGGTCTGCTGGGCAGAGGCGGGAAAGCTCCAGGGTGGTGGATGGGGATAAACTGTGAAGAGCATGTGGTTTGAGTCTGTGTGACTGGAGTCTTCCTTGCCTCAGACACTGGAGTCTTCCTCATCTCAGTCTGCGTCTTCACCTGTTTCCCAGCATCCGTTGTTTTATCATGACTGTTCTTCTTCACCTCACTCTTTCTCTTGCCCTCTTTCTTCTGCTCACTCTTCCCTTGTATTCCATTTCCTTTGTTAAATGCAGCTCTGTCCTTCCCTGCATCCCTCTGGTGCTGGCTCCGGTTCTGTTCTCTACTCTGCTCTCGAGGTTTAATGTTCTCCTTGAAGGTGACCACAGGTCTCTCACTGCCATCCAGCGCACTGTTCTGGTTCTTTCCGGCGGAGAGGACTGACTTCAGGCCCTGGGTGCTGTCATTGGGGGTCTGCTCACCATTAGAGGACTCCTGGAGGACAGGTGTGTCTTTTTCCTGTGGCTCTTCCACAACCATCTCAGGGATATCAGTGATGAAGAGCAGAAGGCCATCACTTATGCGACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU37906 True 911 lncRNA 0.42 3 14417926 14419034

Neighbor

gene id symbol gene type direction distance location
CI01000004_14389315_14396492 NMNAT2 coding downstream 21434 14389035 ~ 14396492 (-)
CI01000004_14115087_14115790 TCTEX1D4 coding downstream 302136 14115005 ~ 14115790 (-)
CI01000004_14041671_14073418 TNW, TNN coding downstream 344156 14041076 ~ 14073770 (-)
CI01000004_13720679_13777075 PAPPA2 coding downstream 640851 13720457 ~ 13777075 (-)
CI01000004_13354130_13419831 BRINP2 coding downstream 998095 13354130 ~ 13419831 (-)
CI01000004_14425486_14425711 NA coding upstream 6330 14424179 ~ 14426902 (-)
CI01000004_14543631_14551256 NA coding upstream 122481 14541515 ~ 14551352 (-)
CI01000004_14557340_14560918 TRAC coding upstream 138247 14557281 ~ 14561042 (-)
CI01000004_14563131_14563558 NA coding upstream 143035 14562069 ~ 14563801 (-)
CI01000004_14569847_14571236 NA coding upstream 150772 14569806 ~ 14571496 (-)
G33445 NA non-coding downstream 31568 14384729 ~ 14386358 (-)
G33583 NA non-coding downstream 39387 14378267 ~ 14378539 (-)
G33581 NA non-coding downstream 42813 14370825 ~ 14375113 (-)
G33579 NA non-coding downstream 51520 14366154 ~ 14366406 (-)
G33443 NA non-coding downstream 61900 14351849 ~ 14356026 (-)
G33622 NA non-coding upstream 66982 14486016 ~ 14489846 (-)
G33627 NA non-coding upstream 69811 14488845 ~ 14492786 (-)
G33633 NA non-coding upstream 78411 14497445 ~ 14499458 (-)
G33638 NA non-coding upstream 102333 14521367 ~ 14521578 (-)
G32207 NA other downstream 2033146 12376168 ~ 12384780 (-)
G32150 NA other downstream 2636975 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 3005019 11406957 ~ 11412907 (-)
G31203 NA other downstream 3667285 10746437 ~ 10750641 (-)
G30316 NA other downstream 5011005 9377937 ~ 9406921 (-)
G33746 NA other upstream 149759 14568793 ~ 14569264 (-)
G33750 NA other upstream 159424 14578458 ~ 14579001 (-)
G33755 NA other upstream 162372 14581406 ~ 14581873 (-)
G33756 NA other upstream 166137 14585171 ~ 14585745 (-)

Expression


Co-expression Network