G33445


Basic Information

Item Value
gene id G33445
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14384729 ~ 14386358 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU37915
TTTTACAATCTGTTTTACACTAGGTCCATAAAATAGTTCCTCTCAGGACCTTAAGGACAAAAATGTCCCCAATGAAACCCATTATAACTGCAATTTTCAATCCCAGGGTTATTTAACTATAAAATAATGCAGTCTTTGTTAATAGGCTTTCATTCTGTTGGCTTCAAAATTAAATTTTTTTACTAGATGGTGACATTTTCTCAGGTTTGGCCGATAAAGCAAATTCTGGCTTTATTCCTATTTTCTGCTTATGCATATTATAGAGCCAATTATGCACGTATAATTGTGTGGGTGTGTTGGTATGGATGTCAGAGTGTGGTTTGTATGTGTGTAATAAAAAAATGTGCATGTGTGTGTAAATTTGAGAGAGAAAAACTCTACTGTACTGCAAATCACAAATCCAACCACTGTGTGCACCAGTGGAGCTTTGCTGGCATCTAATGGGGAAAATTTGGTACTGCGCCCAAAGAAAATCTTATTGAACGCTCATTTTTTGAGATATCAACCTGAAATTTGCTTCTTTACATTTATGGCTTTGATTTTCTAACTGTTTAACATGTTTCATAAAATAGATATTTTAAATAAAATAATGTTCGTAAATCATTTTCAAAAACTTTAACCTCTATGTCTTTTTCGTTTACTTCAACAACAATCTGCCAAGGGTCTTCACCCAAAAATGAAAATTTGATGTTTACCTGCTTACCCCCAGGGCATCCAAGATGTAGGTGACTTTGTTTCTTCAGTAGAACACAAATGATGATTTTTAACACAACGGAAATTATGTCTCACGTGTATGCTTCAATGAGTGCGAGACATCACTTCCGTTGTCAGAGTGCGTTCAGACCTCACCAACCGGATGCGCAACGCAGTTGGACACAGTGGTGTTTTAGAGGTAAAAAATGATATAAATACTGTTCGGTTTCTCGCACAAACCAATCGTTTCGTGTATTAGGACATTAATGTGTCGTCACGAGCCGCAGGGTTTAATTTGGATTTGTTTGTGCATGTTTTTTTTTACTCTTATAGATTGTGTTGCCATTGACATGCATTATACGACTGACAGACGGCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGAATGCCCTGGGGGTAAGCAGATAGACATCAAATTTTCATTTTTGGGTGAACTATCCCTTTAAGTCTGTGCTCCCAAGCTTCAAATTTGACATGGACATTTTTGTCCTCTAAGGATCTCAGAGTAACTTTTTTAAACTGATGCACAAGGGTTAAACTATGTAACATTGTGATTTGGCCCTGCAGTAACCCAAAGCCTTTACGGCCTTTCAATAGGTGGTATGTTGTAACAGCCATTAGGAATGTTTTTACGGATCTCCTCTAAGTTGGCAATGTCATCCAGGATGGTGTTGATGTCTTTGATCATGCCTAGAATGGTGTCTCTCTGCTGGGTTTCCTTCTCCTCCAGCTCCTTGAGTCTGGGCTTCAGCTCTTTCTCCACGCGACTGCGGCTTTTAGCAATGGCATTCTCTAGGTCAGCCACTCGTTTGTTGTCGA
>TU37914
GTGTTAATGCCAACTGCATAAATGTGTATTTTTTATTGAAATTTTACTATTTCACCCCCATTTATTTTACAATCTGTTTTACACTAGGTCCATAAAATAGTTCCTCTCAGGACCTTAAGGACAAAAATGTCCCCAATGAAACCCATTATAACTGCAATTTTCAATCCCAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU37915 False 1566 lncRNA 0.38 1 14384729 14386294
TU37914 True 171 lncRNA 0.33 1 14386188 14386358

Neighbor

gene id symbol gene type direction distance location
CI01000004_14115087_14115790 TCTEX1D4 coding downstream 268939 14115005 ~ 14115790 (-)
CI01000004_14041671_14073418 TNW, TNN coding downstream 310959 14041076 ~ 14073770 (-)
CI01000004_13720679_13777075 PAPPA2 coding downstream 607654 13720457 ~ 13777075 (-)
CI01000004_13354130_13419831 BRINP2 coding downstream 964898 13354130 ~ 13419831 (-)
CI01000004_13208157_13210917 CENPL coding downstream 1173812 13207881 ~ 13210917 (-)
CI01000004_14389315_14396492 NMNAT2 coding upstream 2677 14389035 ~ 14396492 (-)
CI01000004_14425486_14425711 NA coding upstream 39006 14424179 ~ 14426902 (-)
CI01000004_14543631_14551256 NA coding upstream 155157 14541515 ~ 14551352 (-)
CI01000004_14557340_14560918 TRAC coding upstream 170923 14557281 ~ 14561042 (-)
CI01000004_14563131_14563558 NA coding upstream 175711 14562069 ~ 14563801 (-)
G33583 NA non-coding downstream 6190 14378267 ~ 14378539 (-)
G33581 NA non-coding downstream 9616 14370825 ~ 14375113 (-)
G33579 NA non-coding downstream 18323 14366154 ~ 14366406 (-)
G33443 NA non-coding downstream 28703 14351849 ~ 14356026 (-)
G33549 NA non-coding downstream 118541 14265737 ~ 14266188 (-)
G33441 NA non-coding upstream 31568 14417926 ~ 14419034 (-)
G33622 NA non-coding upstream 99658 14486016 ~ 14489846 (-)
G33627 NA non-coding upstream 102487 14488845 ~ 14492786 (-)
G33633 NA non-coding upstream 111087 14497445 ~ 14499458 (-)
G32207 NA other downstream 1999949 12376168 ~ 12384780 (-)
G32150 NA other downstream 2603778 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 2971822 11406957 ~ 11412907 (-)
G31203 NA other downstream 3634088 10746437 ~ 10750641 (-)
G30316 NA other downstream 4977808 9377937 ~ 9406921 (-)
G33746 NA other upstream 182435 14568793 ~ 14569264 (-)
G33750 NA other upstream 192100 14578458 ~ 14579001 (-)
G33755 NA other upstream 195048 14581406 ~ 14581873 (-)
G33756 NA other upstream 198813 14585171 ~ 14585745 (-)

Expression


Co-expression Network