CI01000004_09503523_09520686 (TGS1)


Basic Information

Item Value
gene id CI01000004_09503523_09520686
gene name TGS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9502058 ~ 9521982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_09503523_09520686.mRNA
AGCTTCTGTAGTCCTCCATACATTGGAATCATAATGGGGTACCGACTAGGTAGTAGACTGATGTCCACACTAGTGTCTGCATTGAACGTGCCTGTCAGCCGCACAGAGGGTGCTCTTGAGCACATATTTGAACCACAATTGGACATTCTACTGTGGACTTTAGATATTTATATATACACTACCAGTCAAAAGTTTGGAATAAATAAGGTTTATAATAAGAATAATATGTCTCTTATGCTCACCAAGATAGATTACATTTATTTGATCAAAAATACAGTAAAAAAGTAATATTGTGAAATATTATTACAATTTAAAATAACTGATTTCTGTATATTTTAAAATGTCATTTATTCCTGTGATGGCAGAGTTGAATTTTCAGCATCATTAGTCCAGTCTTTAGTTTCACATGATCCATCAAAATCATTCTAATATTCTGATTTGGTGTTCAATTATTATCATTTATTATTGCTTCTCAATTATAAATAATGGTTCTTATTATCAGTGTTGAAAACAATTTTTTTTGCTGCTTAATATTTTTGTGGAAACATTTTTTCCCCATGATTCTTTGATGAATAGAAAGTTCAATGAACAGTATTTATTTGAAATAGAAAACTTTTTTAACATAAATGTCTTTACGGTTACTTTTGAATGTCAGTTTTACGGCAAAGTTTTGAATGGTAATGTATCAAAAAAAAAAATAAAAAAAAATGTTTTTAACATTTATAATAATAAGAAATGTTTCTGAAGCACCAAATCAGCATATTAGAATGATTTCTGGAGGTCATGTGACACTGAAAACTGGAGTAATGACTGCTGAAAATTCAGCTCCGCCATCACAGGAGTAAATTACATTTTAAAACACATTTAAAAATGTTATTATCCTTAATTCTTAACATTGTGCATTGCCAGCTTAATCATTAATGACTGTATGTAGCCATTATCTTTGTGTGGGCTTCGATGCACCTGGCATTAATGTCTAGATGTTCCTGAACTGGATTGCGTTTGCAAATAACGAAAAAAAAAAAAAGCATTAGCATTTACACATTCATCAAACATAGTTCAGTTGTCTGATCACAATGTGCCTCAGATACATTTACACCTGGCTTTTAATATATGCGTGTAAAGGGCATGTTAATGGCCAGATGTGAAGGGGGCCTGTGAGTCCTTGGATTATCCTGTGCAGTGAAGCTTCTCTCTCTTTTTTTTTTTTTTTTTTTTATGTAAATTGTTATTAATGAATGTTGCTGTGAAGTTTTACCCCATTTACTTTAGGAAATGATTTGGCTGTGGCCCAAAATGAATGCTTTTTTTCTCATCTTTAAGGGCCAAGTTTTAGTGAGGATGAAGAACAAAAGAACCATCAAGCATTTGGAAACCCCCCCAGATTATGCCGGCACAGACGAGGACTCTGAGCAGAACCAGCAGTGTGCTGTGAGTGACATCGCTGAGACCCCCGCTGAACAGACATGTCCCATGTCAGAGGAGGCCTGGCTGAGATACTGGCAGCAGCACGGGGAGGGTCTGCTATGGCAAAGCTGGATGGAGAAACACCCCGAAAATTCCAGTAATATGGCGCAGGACTGTTCCCGCTCAGAGGCAGACTGGGACGAGCACTGCCAACAAACATACCAGTACTACTGGGAACAGTTTTACTACTGGGCCGCCCAAGGCTGGACGGTGGACGATTCCCTTAGCACAACCACTGCTTCTGAGGAATATCAGGGCAGCCGAGGAGAAACAGAGGCACTCAACAATCAGATGAAAGAAGGATCGAAAGCAAATGCGATCAGCGTTACACATCTCATAAGCAGCCTGAGCTTATTGACTGAGGAAGTTGACAGCGATGATGGCGACCGGCAGTCTTTGGCCTGTAACTGCGCTGATGAGCCCTGTGATGGTGGAAACCGCAAAAGGTCATCGTCACGTAGAGGCTGCACTGACACATCTGATGGCAACATGAAACACACCTCTGCGCCTTTGAATAATCAGAGTGGACAACCCATAAAGAACAGATCCAATGATGATCAGAGCGATGATGATGATGAACCTCCAGAGAACAGACGAGCTAAAGTGAAGAGAGCTCATGAGCTGGATGCCGAGGAGCTTGCGGAGGTGCCGGTTGAGGAGGCGTGGGATGCTCTTGGGCTGAAACGTGGTCCACAGCCCAAGTTTGACAGCGTTGTGAAGCTGAAAGCAGGCCAGGGTCCATACGCAGGCAGGAGGAGTGAGGAGAACAGAAAGCCCCCTGAGGAAAGAAAAAAAGCAGCCTGCAAGATCAACAAGCACATCTTTTTTACTGATGATGGACCACAATCCACAAAGCCAAAGATCAGCAAAACCCTTCAAAAAGTCCAGAGTTTCCTGCAGCAGGTTCAGACTGATGCTGTCTCTGAGGGGTTGACCCCAGCCTCCATGCCTGAAGCTCTGATTGGGCCATGTGAGAGAGCAGAAGAGGACAGTCTACCTACACGAAAGGAGGACGAGGAAGAAGCAAATAATGAGAGAGATGAAAAAAAGTATGAGAAGACTCCTCAGCACAACAAAAGATGTGAAAAAAGTGAGGAACATCAGCAGAACATTCAGTGTGTCTTCACAGAGCCAGAAGAAAGACAGGACGACGATTCGGATCCCAGAGGAGAGCTGCAGCCCATAGATATCCCTGACTTTTTGCTCCCAGATGCTCCAGAGGATGCTGAAGGAGCTGAGAGTGTGCAGGCCTTTAAAAAGAACAAGAGAAAGAACAGGAAAAGGAGAAAAGATGTGGAGATGCCACCTGAGATTGCAGCAGAACCGGAGCTGGCCAAGTACTGGGCCCAGCGCTACCGTCTGTTTTCCAGGTTCGATGAGGGCATCAAACTTGACCATGAGGGCTGGTTCTCAGTGACTCCTGAGAAGATAGCAGAGCACATTGCTCTGAGGGCGCAGGACAGCTTCAGTACAGAGCTCATTATCGATGCCTTCTGTGGTGTGGGTGGCAATGCCATTCAGTTTGCCCTCACTGGGAAAAGAGTGATCGCTATTGACATCGACCCCATACGCCTGGCTCTGGCACAGCACAATGCAGAAGTGTACGGTGTGGCGCACCGGATAGAGTTCCTGCAGGGAGACTTCCTGCAGTTGGCTCCGCGCCTGCGGGCAGACATGGTTTTCCTAAGTCCCCCGTGGGGAGGACCAGAGTACCTCAGTGCTGACGTCTTCAACATCAAGACCATGATGACTCCTGATGGATATCCTTTCAGTCTTACACTCTGTGCTTTTATTCTATCTAGACAGTTTCCTTTCAAATGAGGTTTTTATTAGAGTGGAAAGTTCAGATTTGTCCTTTTTCACATCACTCGCATTAATGAAATACTTTCTAATGTATGTGGTCAAGATGCTTCAAACCGCCTATTCCAACTTCCTTAACCATCTATACATTTGAAATTTTCAGGTTGTCAAAAATGATTTCAGACAATATTGTCTATTTTCTTCCTCGAAATGCGGACATGGAACAGGTAATGTTTATTTATTTACACAAATTTTAAAATGGTAATCTGAAGACCCCCTTTTCTATATTGATGCTAAAAGTTATTGTTCACTTGTAGATGTACTCTAGCCTTTAGATAAACTTAACGCTAAGTTGACAAATTTTATAATGTTCTTCACCTTGGCCATAGTGGTTAACAAAGTGTTGCTGTTTCGTGGGTGTTAAACAGCATAGCCACATTTGTGCACTGTGTATCTGTTTTACACAGATAGAAACATGCTGTTCGTAACCCAATACATCAGCCAGTGATCTTAATTCCTATAAAGTCAAAATAGTCTGAGTGGTTTGTCACTTGGTTCACTCCTTTTAGCATTTTTTTATTAGTACTGATGGTTGTTGTAGATCTCTAGTTCCTGTTATCACTTAAGTGCCTCATATCTGTCTAGCAGTACAATATAAACTTGGTGCCAAAGTCCATCAGACAAAATTTTATAATTATTTAATCAATTATTTTCACAGAATGTGTTTGTTGACTGTATACCTGGGTTTAGTTTAGTGCGTATGATGTGTCAATTGCAGCTGTATCATGGTTTGTTATTTCTCTGAAAGGTCTAGTTGTCTGGTGGAGTGTGGTTGCACCTTTTGAAACCACACTGCTTTCCGGAGTCTTCTGTGTTTGACTATAGCAAATTTCTTCAATAATATCTAAAGTGAATACATCATTACCTTTTGCCCATCACTGTGCTACTTGTAATGTTAAATACTATGTATTAGCGTGACTTGTGATTGAATTCAAGAACAATTTTCCCTAAGCCAAGATAGTGTGACGATACTATACTAATATGTTGATATTAGCAACTACTGACCATGTTGCCTGTGATGGTAACTCACACCTGCTCTGCCTCATGTCTTCTTCCTCTTTCTCTTCATACCCCTCCCCCTTTCCGTCTTTCACTCTGTGTAGATTGCATCTCTCGCTGGCCCAGGTGGGAAGGTGGAAGTAGAGCAGAACTTTCTGAACAACAAACTGAAAACAATTACTGCATACTTTGGCAGCTTAATTAAGCCAAAAACTTAAAACATTTTATTTCCTTTTTCTACTTCTTTTAGTCATTTATGTTATCTGTACTTACTTATTGCACTTAAATTGTACTTGTATCTGCTGTTTATTGTTTTGTAAAGTCATTGACAATGAATTTTACAGACTAACGTGTACTCATGATGCTGCTAGTTTAATGTTTATTTTAACAGTTTTGTTTTTTCCAGCATTGATATTTACCTATTAAA

Function

symbol description
tgs1 Orthologous to human TGS1 (trimethylguanosine synthase 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K14292 TGS1; trimethylguanosine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_09503523_09520686.mRNA True 4753 mRNA 0.41 8 9502058 9521982

Neighbor

gene id symbol gene type direction distance location
CI01000004_09490844_09498265 LYN coding downstream 3793 9490279 ~ 9498265 (-)
CI01000004_09486618_09488654 UROD, DCUP coding downstream 13404 9486357 ~ 9488654 (-)
CI01000004_09425074_09426973 NA coding downstream 73663 9424967 ~ 9428395 (-)
CI01000004_09367511_09370243 TOE1 coding downstream 131815 9367461 ~ 9370243 (-)
CI01000004_09329111_09337596 NA coding downstream 164462 9328986 ~ 9337596 (-)
CI01000004_09534571_09550154 XKR4 coding upstream 12536 9534518 ~ 9550418 (-)
CI01000004_09592354_09593541 XKR4 coding upstream 70314 9592296 ~ 9593541 (-)
CI01000004_09609822_09616099 RNF31 coding upstream 87593 9609575 ~ 9616099 (-)
CI01000004_09616639_09622200 RNF31 coding upstream 94657 9616639 ~ 9622660 (-)
CI01000004_09639469_09656035 NA coding upstream 116843 9638825 ~ 9656035 (-)
G30316 NA non-coding downstream 123582 9377937 ~ 9406921 (-)
G30280 NA non-coding downstream 196434 9305390 ~ 9305624 (-)
G30276 NA non-coding downstream 222128 9279720 ~ 9279930 (-)
G30272 NA non-coding downstream 227306 9274499 ~ 9274752 (-)
G30108 NA non-coding downstream 239223 9262628 ~ 9262835 (-)
G30369 NA non-coding upstream 135942 9657924 ~ 9658522 (-)
G30370 NA non-coding upstream 136766 9658748 ~ 9659060 (-)
G30376 NA non-coding upstream 166909 9688891 ~ 9689116 (-)
G30377 NA non-coding upstream 167292 9689274 ~ 9689506 (-)
G30412 NA non-coding upstream 226364 9748346 ~ 9748560 (-)
G29746 NA other downstream 1143931 8354498 ~ 8358127 (-)
G29656 NA other downstream 1536558 7964364 ~ 7965500 (-)
G29388 NA other downstream 2870151 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2956486 6538904 ~ 6541252 (-)
G31203 NA other upstream 1224455 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 1885483 11406957 ~ 11412907 (-)
G32150 NA other upstream 2254537 11776519 ~ 11780951 (-)
G32207 NA other upstream 2854186 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 5028818 14541515 ~ 14551352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location